5t4v

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'''Unreleased structure'''
 
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The entry 5t4v is ON HOLD until Paper Publication
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==Crystal structure of the bromodomain of human BRPF1 in complex with NI-48 ligand==
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<StructureSection load='5t4v' size='340' side='right' caption='[[5t4v]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5t4v]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5T4V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5T4V FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=N48:4-CYANO-N-(7-METHOXY-1,4-DIMETHYL-2-OXO-1,2-DIHYDROQUINOLIN-6-YL)BENZENE-1-SULFONAMIDE'>N48</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5t4v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5t4v OCA], [http://pdbe.org/5t4v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5t4v RCSB], [http://www.ebi.ac.uk/pdbsum/5t4v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5t4v ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/BRPF1_HUMAN BRPF1_HUMAN]] Component of the MOZ/MORF complex which has a histone H3 acetyltransferase activity. Positively regulates the transcription of RUNX1 and RUNX2.<ref>PMID:16387653</ref> <ref>PMID:18794358</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The BRPF (bromodomain and PHD finger-containing) family are scaffolding proteins important for the recruitment of histone acetyltransferases of the MYST family to chromatin. Evaluation of the BRPF family as a potential drug target is at an early stage although there is an emerging understanding of a role in acute myeloid leukemia (AML). We report the optimization of fragment hit 5b to 13-d as a biased, potent inhibitor of the BRD of the BRPFs with excellent selectivity over nonclass IV BRD proteins. Evaluation of 13-d in a panel of cancer cell lines showed a selective inhibition of proliferation of a subset of AML lines. Pharmacokinetic studies established that 13-d had properties compatible with oral dosing in mouse models of disease (Fpo 49%). We propose that NI-42 (13-d) is a new chemical probe for the BRPFs suitable for cellular and in vivo studies to explore the fundamental biology of these proteins.
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Authors: Tallant, C., Igoe, N., Bayle, E.D., Nunez-Alonso, G., Newman, J.A., Mathea, S., Savitsky, P., Fedorov, O., Brennan, P.E., Muller, S., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Fish, P., Knapp, S., Structural Genomics Consortium (SGC)
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Design of a Biased Potent Small Molecule Inhibitor of the Bromodomain and PHD Finger-Containing (BRPF) Proteins Suitable for Cellular and in Vivo Studies.,Igoe N, Bayle ED, Fedorov O, Tallant C, Savitsky P, Rogers C, Owen DR, Deb G, Somervaille TC, Andrews DM, Jones N, Cheasty A, Ryder H, Brennan PE, Muller S, Knapp S, Fish PV J Med Chem. 2017 Jan 26;60(2):668-680. doi: 10.1021/acs.jmedchem.6b01583. Epub, 2017 Jan 9. PMID:28068087<ref>PMID:28068087</ref>
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Description: Crystal structure of the bromodomain of human BRPF1 in complex with NI-48 ligand
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Bayle, E.D]]
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<div class="pdbe-citations 5t4v" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Arrowsmith, C H]]
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[[Category: Bayle, E D]]
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[[Category: Bountra, C]]
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[[Category: Brennan, P E]]
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[[Category: Delft, F von]]
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[[Category: Edwards, A M]]
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[[Category: Fedorov, O]]
[[Category: Fish, P]]
[[Category: Fish, P]]
[[Category: Igoe, N]]
[[Category: Igoe, N]]
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[[Category: Nunez-Alonso, G]]
 
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[[Category: Fedorov, O]]
 
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[[Category: Muller, S]]
 
[[Category: Knapp, S]]
[[Category: Knapp, S]]
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[[Category: Bountra, C]]
 
[[Category: Mathea, S]]
[[Category: Mathea, S]]
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[[Category: Arrowsmith, C.H]]
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[[Category: Muller, S]]
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[[Category: Von Delft, F]]
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[[Category: Newman, J A]]
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[[Category: Edwards, A.M]]
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[[Category: Nunez-Alonso, G]]
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[[Category: Brennan, P.E]]
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[[Category: Structural genomic]]
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[[Category: Newman, J.A]]
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[[Category: Structural Genomics Consortium (Sgc)]]
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[[Category: Tallant, C]]
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[[Category: Savitsky, P]]
[[Category: Savitsky, P]]
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[[Category: Tallant, C]]
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[[Category: Sgc]]
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[[Category: Transcription]]

Revision as of 09:28, 10 March 2017

Crystal structure of the bromodomain of human BRPF1 in complex with NI-48 ligand

5t4v, resolution 1.65Å

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