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ATPase

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Line 66: Line 66:
*''F1F0 ATPase α, β subunits''
*''F1F0 ATPase α, β subunits''
-
**[1sky]] – BsF1-ATPS – Bacillus sp. Ps3
+
**[1sky]] – BsF1-ATPS – Bacillus sp. Ps3<br />
 +
**[[5cdf]] – PdATPase - ''Paracoccus denitrificans''<br />
*''F1F0 ATPase α,γ subunits''
*''F1F0 ATPase α,γ subunits''
Line 86: Line 87:
*''F1F0 ATPase α, β, γ subunits''
*''F1F0 ATPase α, β, γ subunits''
-
**[[1ohh]], [[2jiz]], [[4tt3]], [[4tsf]] – bF1-ATPS+ IF1 inhibitor – bovine<br />
+
**[[1ohh]], [[2jiz]], [[4tt3]], [[4tsf]], [[4z1m]] – bF1-ATPS+ IF1 inhibitor – bovine<br />
**[[1e1q]], [[2w6e]], [[2w6f]], [[2w6g]], [[2w6h]], [[2w6i]], [[2w6j]] - bF1-ATPS<br />
**[[1e1q]], [[2w6e]], [[2w6f]], [[2w6g]], [[2w6h]], [[2w6i]], [[2w6j]] - bF1-ATPS<br />
**[[1e1r]] - bF1-ATPS+Mg+ADP+AlF4<br />
**[[1e1r]] - bF1-ATPS+Mg+ADP+AlF4<br />
Line 101: Line 102:
**[[1jnv]] - EcF1-ATPS <br />
**[[1jnv]] - EcF1-ATPS <br />
**[[3oaa]] – EcF1-ATPS (mutant)<br />
**[[3oaa]] – EcF1-ATPS (mutant)<br />
-
**[[2qe7]] – F1-ATPS – ''Bacillus''<br />
+
**[[2qe7]], [[4xd7]] – F1-ATPS – ''Bacillus''<br />
 +
**[[5ik2]], [[5hkk]] – F1-ATPS – ''Cakdalkalibacillus thermarum''<br />
*''F1F0 ATPase α, β, γ, δ, ε subunits''
*''F1F0 ATPase α, β, γ, δ, ε subunits''
Line 107: Line 109:
**[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]] - bF1-ATPS<br />
**[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]] - bF1-ATPS<br />
**[[2v7q]], [[1e79]], [[2ck3]] - bF1-ATPS+inhibitor<br />
**[[2v7q]], [[1e79]], [[2ck3]] - bF1-ATPS+inhibitor<br />
 +
**[[4yxw]] - bF1-ATPS+ ANP<br />
**[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br />
**[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br />
**[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP - yeast<br />
**[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP - yeast<br />
Line 118: Line 121:
**[[4b2q]] – yATPase subunits α,β,γ,δ,ε +9,B,D,6,O – Cryo EM
**[[4b2q]] – yATPase subunits α,β,γ,δ,ε +9,B,D,6,O – Cryo EM
 +
 +
*''F1F0 ATPase α,β,γ,δ,ε,A,C subunits''
 +
 +
**[[5dn6]] – PdATPase + zeta inhibitor protein <br />
 +
 +
*''F1F0 ATPase α,β,γ,δ,ε,A,B,C subunits''
 +
 +
**[[5t4q]], [[5t4p]], [[5t4o]] – EcATPase – Cryo EM<br />
 +
 +
*''F1F0 ATPase α,β,γ,δ,ε,A,B,C,D,F,H,AAP1 subunits''
 +
 +
**[[5lqz]], [[5lqy]], [[5lqx]] – ATPase + ATPase inhibitor protein – ''Ogataea angusta'' - Cryo EM<br />
 +
 +
*''F1F0 ATPase α,β,γ,δ,ε,B1,C1,D,O subunits''
 +
 +
**[[5fil]], [[5fik]], [[5fij]], [[5ari]], [[5arh]], [[5are]], [[5ara]] – bATPase – Cryo EM<br />
 +
**[[1bmf]] - bF1-ATPS<br />
**[[1bmf]] - bF1-ATPS<br />
Line 132: Line 152:
**[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br />
**[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant)<br />
**[[4o1s]] - ATPS subunit A – ''Thermoplasma volcanium''<br />
**[[4o1s]] - ATPS subunit A – ''Thermoplasma volcanium''<br />
 +
**[[5i1m]] – yATPase <br />
 +
**[[5bn5]] – NeATPase + NEQ263 – ''Nanoarchaeum equitans'' <br />
 +
**[[5bn4]] – NeATPase + NEQ263 + ANP <br />
 +
**[[5bn3]] – NeATPase + NEQ263 + ADP <br />
*''V-ATPase subunit B''
*''V-ATPase subunit B''
Line 181: Line 205:
*''V-ATPase subunit K''
*''V-ATPase subunit K''
-
**[[2bl2]], [[2cyd]] - ATPS subunit K – ''Enterococcus hirae''<br />
+
**[[2bl2]], [[2cyd]] - EhATPS subunit K – ''Enterococcus hirae''<br />
*''V-ATPase subunit I''
*''V-ATPase subunit I''
**[[3rrk]] – ATPS subunit I N terminal – ''Meiothermus ruber''
**[[3rrk]] – ATPS subunit I N terminal – ''Meiothermus ruber''
 +
 +
*''V-ATPase multi subunits''
**[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br />
**[[4dl0]], [[4efa]] - yATPase subunits C,G,E<br />
**[[3w3a]] - yATPS subunit A,B,D,F<br />
**[[3w3a]] - yATPS subunit A,B,D,F<br />
 +
**[[5tj5]] - yATPS subunit A,C,C’,C’’,D,E,F<br />
 +
**[[5bw9]] - yATPS subunit A,B,D,E,G,H – Cryo EM<br />
 +
**[[5d80]] - yATPS subunit A,B,D,E,F,G,H<br />
**[[3a5c]], [[3a5d]] - TtATPS subunit A,B,D,F<br />
**[[3a5c]], [[3a5d]] - TtATPS subunit A,B,D,F<br />
 +
**[[5tsj]] - TtATPS subunit A,B,C,D,E,F,G + antibody - Cryo-EM<br />
 +
**[[5gas]], [[5gar]] - TtATPS subunit A,B,C,D,E,F,G,I - Cryo-EM<br />
**[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br />
**[[3gqb]] - TtATPS subunit A (mutant),B (mutant)<br />
**[[3k5b]] - TtATPS subunit E (mutant)+C<br />
**[[3k5b]] - TtATPS subunit E (mutant)+C<br />
 +
**[[5knd]], [[5knc]], [[5knb]] - EhATPS subunit A,B,D,F<br />
*'''P-ATPase'''
*'''P-ATPase'''
Line 206: Line 238:
**[[1aw0]], [[2aw0]] - hATPase 4th MBD – NMR<br />
**[[1aw0]], [[2aw0]] - hATPase 4th MBD – NMR<br />
**[[1kvi]], [[1kvj]] - hATPase 1st MBD – NMR<br />
**[[1kvi]], [[1kvj]] - hATPase 1st MBD – NMR<br />
 +
**[[5t7l]] - hATPase 1st MBD + Cu transport protein<br />
**[[3dxs]] - AtATPase MBD – ''Arabidopsis thaliana''<br />
**[[3dxs]] - AtATPase MBD – ''Arabidopsis thaliana''<br />
**[[3voy]] - AfATPase – Archaeoglobus fulgidus – CryoEM<br />
**[[3voy]] - AfATPase – Archaeoglobus fulgidus – CryoEM<br />
Line 237: Line 270:
**[[2b8e]] - AfATPase CopA NBD<br />
**[[2b8e]] - AfATPase CopA NBD<br />
**[[2xze]] - SaATPase<br />
**[[2xze]] - SaATPase<br />
 +
**[[5aw9]], [[5aw8]], [[5aw7]], [[5aw6]], [[5aw5]], [[5aw4]], [[5aw3]], [[5aw2]], [[5aw1]], [[5aw0]], [[5avz]], [[5avy]], [[5avx]], [[5avw]], [[5avv]], [[5avu]], [[5avt]], [[5avs]], [[5avr]], [[5avq]] – SaATPase + phospholemman-like protein<br />
 +
**[[4xe5]] - bATPase <br />
**[[1mo8]], [[1mo7]] - ATPase α-1 – rat<br />
**[[1mo8]], [[1mo7]] - ATPase α-1 – rat<br />
**[[1q3i]] - pATPase NBD<br />
**[[1q3i]] - pATPase NBD<br />
Line 256: Line 291:
**[[2zbd]], [[3ar8]] - rATPase+AlF4+nucleotide+Ca<br />
**[[2zbd]], [[3ar8]] - rATPase+AlF4+nucleotide+Ca<br />
**[[3ar9]] - rATPase+BeF3+nucleotide<br />
**[[3ar9]] - rATPase+BeF3+nucleotide<br />
-
**[[2dqs]], [[3ar2]], [[1vfp]] - rATPase+AMPPCP<br />
+
**[[2dqs]], [[3ar2]], [[1vfp]], [[4xou]] - rATPase+AMPPCP<br />
 +
**[[5a3r]] - rATPase + BeF3 + AMPPCP<br />
**[[2c88]], [[2c8k]], [[3ar4]], [[3ar3]], [[3ar5]], [[3ar7]] - rATPase+nucleotide+TG<br />
**[[2c88]], [[2c8k]], [[3ar4]], [[3ar3]], [[3ar5]], [[3ar7]] - rATPase+nucleotide+TG<br />
**[[2ear]], [[2c8l]] - rATPase+TG<br />
**[[2ear]], [[2c8l]] - rATPase+TG<br />
Line 274: Line 310:
**[[1t5t]] - rATPase Ca2E1 state+ADP+AlF4<br />
**[[1t5t]] - rATPase Ca2E1 state+ADP+AlF4<br />
**[[1su4]] - rATPase +2Ca2<br />
**[[1su4]] - rATPase +2Ca2<br />
-
**[[2by4]], [[2yfy]], [[3nal]], [[3nam]], [[3nan]], [[4uu1]], [[4uu0]], [[4j2t]] - rATPase HNE2 state+thapsigargin derivative
+
**[[2by4]], [[2yfy]], [[3nal]], [[3nam]], [[3nan]], [[4uu1]], [[4uu0]], [[4j2t]], [[5a3s]] - rATPase HNE2 state+thapsigargin derivative<br />
 +
**[[5a3q]] - rATPase + thapsigargin derivative + AMPPCP<br />
 +
**[[4ycn]], [[4ycm]] - rATPase + macrolide<br />
 +
**[[4y3u]] - rATPase + phospholamban<br />
*''Zn+2 transporting ATPase''
*''Zn+2 transporting ATPase''
Line 293: Line 332:
**[[1ii9]] - EcATPase<br />
**[[1ii9]] - EcATPase<br />
**[[3h84]], [[3idq]], [[3a36]], [[3a37]] - yATPase GET3 <br />
**[[3h84]], [[3idq]], [[3a36]], [[3a37]] - yATPase GET3 <br />
-
**[[4pwx]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein <br />
+
**[[4pwx]], [[5bwk]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein <br />
 +
**[[5bw8]] - yATPase GET3 + golgi to ER traffic protein + ubiquitin-like protein + protein<br />
 +
**[[4xwo]] - yATPase GET3 + antibody + Sec22<br />
 +
**[[4xvu]] - yATPase GET3 + antibody + NYV1<br />
 +
**[[4xtr]] - yATPase GET3 + antibody + pep12p<br />
**[[3sja]], [[3sjb]], [[3sjc]], [[3sjd]], [[3zs8]], [[3zs9]], [[3b2e]], [[3vlc]] - yATPase GET3 + GET1 cystolic domain<br />
**[[3sja]], [[3sjb]], [[3sjc]], [[3sjd]], [[3zs8]], [[3zs9]], [[3b2e]], [[3vlc]] - yATPase GET3 + GET1 cystolic domain<br />
**[[3ibg]] - ATPase GET3 – ''Aspergillus fumigatus''
**[[3ibg]] - ATPase GET3 – ''Aspergillus fumigatus''
Line 334: Line 377:
**[[3cf0]], [[3cf1]], [[3cf3]] – mATPase NBD+ADP – mouse<br />
**[[3cf0]], [[3cf1]], [[3cf3]] – mATPase NBD+ADP – mouse<br />
**[[3cf2]] - mATPase NBD+ADP+AMP-PNP<br />
**[[3cf2]] - mATPase NBD+ADP+AMP-PNP<br />
-
**[[2r31]], [[2p4x]] – PdATPase ATP12 – ''Paracoccus denitrificans''<br />
+
**[[2r31]], [[2p4x]] – PdATPase ATP12 <br />
**[[2zd2]] – PdATPase (mutant) ATP12<br />
**[[2zd2]] – PdATPase (mutant) ATP12<br />
**[[1d8s]] – EcATPase F1<br />
**[[1d8s]] – EcATPase F1<br />
**[[1vdz]] – PhATPase subunit A – ''Pyrococcus horikoshii''<br />
**[[1vdz]] – PhATPase subunit A – ''Pyrococcus horikoshii''<br />
 +
 +
*''Monosaccharide transporting ATPase''
 +
 +
**[[5dte]] – AsATPase – ''Actinobacillus succinogenes''<br />
 +
**[[5zjp]] – AsATPase + ribopyranose<br />
*'''RNA-dependent ATPase'''
*'''RNA-dependent ATPase'''
Line 343: Line 391:
**[[3eaq]], [[3i31]], [[3i32]] – TtATPase fragment<br />
**[[3eaq]], [[3i31]], [[3i32]] – TtATPase fragment<br />
**[[4kbg]], [[4kbf]] - TtATPase helicase core domain<br />
**[[4kbg]], [[4kbf]] - TtATPase helicase core domain<br />
 +
**[[5mao]] - TtATPase RRM domain <br />
**[[4i69]], [[4i68]] - TtATPase RRM domain (mutant)<br />
**[[4i69]], [[4i68]] - TtATPase RRM domain (mutant)<br />
**[[4i67]] - TtATPase RRM domain + RNA<br />
**[[4i67]] - TtATPase RRM domain + RNA<br />
Line 349: Line 398:
**[[3mwl]] - TtATPase N-terminal (mutant) + 8-oxoadenine<br />
**[[3mwl]] - TtATPase N-terminal (mutant) + 8-oxoadenine<br />
**[[3nej]] - TtATPase reca-like domain (mutant)
**[[3nej]] - TtATPase reca-like domain (mutant)
 +
 +
*ATP-dependent ATPase
 +
 +
**[[5txv]] – EcATPase subunit HSLU<br />
 +
**[[5ji3]], [[5ji2]] – EcATPase subunits HSLU+HSLV<br />
*'''Proteasome-associated ATPase'''
*'''Proteasome-associated ATPase'''
Line 358: Line 412:
*'''Transitional endoplasmic reticulum ATPase'''
*'''Transitional endoplasmic reticulum ATPase'''
-
**[[3hu1]], [[3hu2]], [[3hu3]] – hTer-ATPase + ATPGS<br />
+
**[[5c19]] – hTer-ATPase (mutant) <br />
-
**[[4ko8]], [[4kln]] – hTer-ATPase (mutant) + ATPGS<br />
+
**[[3hu1]], [[3hu2]], [[3hu3]], [[5ftn]], [[5ftm]], [[5ftl]], [[5ftk]], [[5ftj]] – hTer-ATPase + ATPGS<br />
 +
**[[4ko8]], [[4kln]], [[5dyg]], [[5c18]] – hTer-ATPase (mutant) + ATPGS<br />
 +
**[[5dyi]] – hTer-ATPase + ADP<br />
**[[4kod]] – hTer-ATPase (mutant) + ADP<br />
**[[4kod]] – hTer-ATPase (mutant) + ADP<br />
**[[3qc8]], [[3qq8]], [[3qwz]] - hTer-ATPase N terminal + FAS-associated factor 1<br />
**[[3qc8]], [[3qq8]], [[3qwz]] - hTer-ATPase N terminal + FAS-associated factor 1<br />
**[[3qq7]] - hTer-ATPase N terminal<br />
**[[3qq7]] - hTer-ATPase N terminal<br />
-
**[[3tiw]] - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide
+
**[[3tiw]] - hTer-ATPase N terminal + E3 ubiquitin-protein ligase peptide<br />
 +
**[[5c1b]] - hTer-ATPase N terminal + UFD1--SHP peptide<br />
 +
**[[5glf]] - hTer-ATPase N terminal + derlin-1 peptide<br />
 +
**[[5epp]] - hTer-ATPase N terminal + rhomboid-related protein 4 peptide<br />
**[[4kdl]], [[4kdi]] - hTer-ATPase N terminal + ubiquitin thioesterase OTU1<br />
**[[4kdl]], [[4kdi]] - hTer-ATPase N terminal + ubiquitin thioesterase OTU1<br />
 +
**[[5b6c]] - hTer-ATPase N terminal + ubiquitin fusion degradation protein<br />
 +
**[[5ifw]], [[5ifs]] - hTer-ATPase + tether containing UBX domain<br />
**[[1s3s]] - mTer-ATPase ND1 domain + P47 C terminal<br />
**[[1s3s]] - mTer-ATPase ND1 domain + P47 C terminal<br />
 +
**[[4rv0]] - Ter-ATPase N terminal + nuclear protein localization protein – ''Drosophila melanogaster''<br />
*'''LAO/AO transport system ATPase'''
*'''LAO/AO transport system ATPase'''
Line 376: Line 438:
**[[3auy]] - MjRad50 + ADP<br />
**[[3auy]] - MjRad50 + ADP<br />
**[[3av0]] - MjRad50 + ATP<br />
**[[3av0]] - MjRad50 + ATP<br />
 +
**[[5f3w]] - MjRad50 + MRE11 + ATPGS<br />
 +
**[[5dny]] - MjRad50 + MRE11 + DNA<br />
**[[3qg5]] – Rad50 NBD + MRE11 – ''Thermotoga maritima''<br />
**[[3qg5]] – Rad50 NBD + MRE11 – ''Thermotoga maritima''<br />
**[[3qkr]], [[3qks]], [[3qf7]] - PfRad50 NBD + MRE11 – ''Pyrococcus furiosus''<br />
**[[3qkr]], [[3qks]], [[3qf7]] - PfRad50 NBD + MRE11 – ''Pyrococcus furiosus''<br />
Line 388: Line 452:
**[[2xj9]] – CcMipZ (mutant)
**[[2xj9]] – CcMipZ (mutant)
 +
* '''ATPase Rava'''
 +
 +
**[[5fl2]], [[4upf]] – EcATPase LARA domain + lysine decarboxylase<br />
 +
**[[4upb]] – EcATPase + lysine decarboxylase – Cryo EM<br />
**[[3nbx]] – EcATPase Rava + ADP
**[[3nbx]] – EcATPase Rava + ADP

Revision as of 11:15, 13 March 2017

An ATPase, Human RuvB-like 1 dodecamer complex with ADP (PDB code 2c9o)

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3D Structures of ATPase

Updated on 13-March-2017




References

  1. ↑ Gorynia S, Bandeiras TM, Pinho FG, McVey CE, Vonrhein C, Round A, Svergun DI, Donner P, Matias PM, Carrondo MA. Structural and functional insights into a dodecameric molecular machine - The RuvBL1/RuvBL2 complex. J Struct Biol. 2011 Sep 10. PMID:21933716 doi:10.1016/j.jsb.2011.09.001
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