User:Alexander Lee Schmidt/Sandbox 1

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<StructureSection load='4fr8' size='340' side='right' caption='4FR8 Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin' scene=''>
<StructureSection load='4fr8' size='340' side='right' caption='4FR8 Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin' scene=''>
==Structure==
==Structure==
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The main ingredient of NitroDura is 1,2,3-propanetriol trinitrate a/k/a <scene name='74/745476/Nitroglycerinmolecule/1'>Nitroglycerin</scene>. Nitroglycerin is molecule that when broken down to nitric oxide binds to protein domains found in smooth muscle. These binding domains are often found in the form of dimers that require multiple NO molecules to bind as seen in <scene name='74/745476/2o0c_molecule/2'>Nitric Oxide bound to the domain of Nostoc cyanbacterial protein</scene>. The Nitric Oxide is often buried deep within the protein, that in conjunction with other molecular interactions triggers structural changes that activate proteins to serve their specific functions (<scene name='74/745476/2o0c_molecule/2'>NO and CO activating soluble guanylyl cyclase via a heme pivot-bend mechanism.</scene>). In humans, NO binds to protein domains in this same fashion as seen in <scene name='74/745476/Guanylate_cyclase/1'>Heterodimeric Catalytic Domain of Wild-type Human Soluble Guanylate Cyclase </scene>.
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The main ingredient of NitroDura is 1,2,3-propanetriol trinitrate a/k/a <scene name='74/745476/Nitroglycerinmolecule/1'>Nitroglycerin</scene>. Nitroglycerin is molecule that when broken down to nitric oxide binds to protein domains found in smooth muscle. These binding domains are often found in the form of dimers that require multiple NO molecules to bind as seen in <scene name='74/745476/2o0c_molecule/2'>Nitric Oxide bound to the domain of Nostoc cyanbacterial protein</scene>. The Nitric Oxide is often buried deep within the protein, that in conjunction with other molecular interactions triggers structural changes that activate proteins to serve their specific functions (<scene name='74/745476/2o0c_molecule/2'>NO and CO activating soluble guanylyl cyclase via a heme pivot-bend mechanism.</scene>). In humans, NO binds to protein domains in this same fashion, as seen in <scene name='74/745476/Guanylate_cyclase/1'>Heterodimeric Catalytic Domain of Wild-type Human Soluble Guanylate Cyclase </scene>.
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<scene name='74/745476/Nitrodura_bound_to_protein/1'>Nitroglycin</scene>
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<scene name='74/745476/2o0c_molecule/2'>Nitric Oxide bound to a domain found in another organsim</scene>
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<scene name='74/745476/2o0c_molecule_clearer/1'>Nitric Oxide bound to a domain found in another organism-clearer</scene>
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<scene name='74/745476/Guanylate_cyclase/1'>Heterodimeric Catalytic Domain of Wild-type Human Soluble Guanylate Cyclase (protein Nitric Oxide is thought to bind to in Humans)</scene>
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==Medication Details==
==Medication Details==
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The medical delivery method for Nitroglycerin can come in the form of tablets (that dissolved under the tongue, or in the cheek), topical ointments, or patches <ref name="citation2">Tryzelaar, Dr. "Nitroglycerin (NTG)." Nitroglycerin (NTG). N.p., n.d. Web. 16 Oct. 2016”</ref>. Nitro-Dur delivers nitroglycerin to the body in the form of an acrylic patch <ref name="citation1">"NITRO-DUR® TRANSDERMAL DELIVERY SYSTEM." N.p., 3 Oct. 2014. Web. 16 Oct. 2016 </ref>. The NitroDur patch itself is composed of four layers that each serve a specific function in delivering an adequate dosage of nitroglycerin to the body. The exposed outermost layer of the patch is made up of aluminized plastic that is impermeable to nitroglycerin. This material prevents nitroglycerin from escaping through the back of the patch and directs the molecule to diffuse in the desired direction of toward the skin. The next layer consists of the actual nitroglycerin adsorbed in a mixture of lactose, colloidal silicon dioxide, and silicone medical fluid. The third layer is an ethylene-vinyl acetate copolymer layer that is selectively permeable to the desired nitroglycerin molecule. The final layer that functions to adhere the patch to the skin is composed of hypoallergenic silicone <ref>"Transderm Nitro (Nitroglycerin): Side Effects, Interactions, Warning, Dosage & Uses." RxList. N.p., 30 Mar. 2009. Web. 12 Nov. 2016.</ref>.
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The medical delivery method for Nitroglycerin can come in the form of tablets (that dissolved under the tongue, or in the cheek), topical ointments, or patches <ref name="citation2">Tryzelaar, Dr. "Nitroglycerin (NTG)." Nitroglycerin (NTG). N.p., n.d. Web. 16 Oct. 2016”</ref>. Nitro-Dur delivers nitroglycerin to the body in the form of an acrylic patch <ref name="citation1">"NITRO-DUR® TRANSDERMAL DELIVERY SYSTEM." N.p., 3 Oct. 2014. Web. 16 Oct. 2016 </ref>. The NitroDur patch itself is composed of four layers that each serve a specific function in delivering an adequate dosage of nitroglycerin to the body. The exposed outermost layer of the patch is made up of aluminized plastic that is impermeable to nitroglycerin. This material prevents nitroglycerin from escaping through the back of the patch and directs the molecule to diffuse in the desired direction of toward the skin. The next layer consists of the actual nitroglycerin adsorbed in a mixture of lactose, colloidal silicon dioxide, and silicone medical fluid. The third layer is an ethylene-vinyl acetate copolymer layer that is selectively permeable to the desired nitroglycerin molecule. The final layer that functions to adhere the patch to the skin is composed of hypoallergenic silicone. <ref>"Transderm Nitro (Nitroglycerin): Side Effects, Interactions, Warning, Dosage & Uses." RxList. N.p., 30 Mar. 2009. Web. 12 Nov. 2016.</ref>
== Function ==
== Function ==
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The mechanism for nitroglycerin breakdown is disputed, but it is know that nitroglycerin eventually breaks down into nitric oxide. In more recent years, nitroglycerin has been found to be broken down with the help of aldehyde dehydrogenase 2 found in the mitochondria. <ref>Mayer, B., and Beretta, M. (2008) The enigma of nitroglycerin bioactivation and nitrate tolerance. News, views, and troubles. Br. J. Pharmacol. 155, 170-184 </ref>
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There has been further proof showing that the breakdown of nitroglycerin permanently alters ALDH2 during Cys-302 attack <ref>Lang, Barbara S., Antonius Cf Gorren, Gustav Oberdorfer, M. Wenzl, Cristina M. Furdui, Leslie B. Poole, Bernd Mayer, and Karl Gruber. "Vascular Bioactivation of Nitroglycerin: Reaction Mechanism Revealed by Crystal Structure of Aldehyde Dehydrogenase-2." BMC Pharmacology and Toxicology BMC Pharmacol Toxicol 13.Suppl 1 (2012): n. pag. Web. 1 Nov. 2016.</ref>.
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The mechanism that is believed to happen takes nitroglycerin (GTN), bound to aldehyde dehydrogenase 2 (ALDH2) through hydrogen bonds and van der waal interactions of the terminal nitrates, then Cysteine-302 (in ALDH2) attacks GTN to form a thionitrate intermediate while also releasing 1,2-glyceryl dinitrate (1,2-GDN) and a small amount of nitric oxide (NO). The thionitrate is then attacked by the surrounding Cysteines (Cys-301 or Cys-303), which forms a disulfide bond and nitrite. The nitrite is then released and converted into NO. Lang et al. also found that daidzin will inhibit GTN breakdown through competitive inhibition because the binding sites of daidzin and GTN overlap <ref>Lang, Barbara S., Antonius Cf Gorren, Gustav Oberdorfer, M. Wenzl, Cristina M. Furdui, Leslie B. Poole, Bernd Mayer, and Karl Gruber. "Vascular Bioactivation of Nitroglycerin: Reaction Mechanism Revealed by Crystal Structure of Aldehyde Dehydrogenase-2." BMC Pharmacology and Toxicology BMC Pharmacol Toxicol 13.Suppl 1 (2012): n. pag. Web. 1 Nov. 2016.</ref>.
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Nitroglycerin is commonly used to treat various conditions involving the heart. It used to increase the chances of detecting coronary artery disease when using MR coronary artery imaging (MRCA). Nitroglycerin increases the vessel length allowing coronary artery disease to be more visible under MRCA <ref name="citation3">PMID: 27731913</ref>. Nitroglycerin is also used to treat heart disease and angina which is classified as heart pain. Angina is caused by inadequate flow of oxygen and blood to the heart. To prevent this problem, nitroglycerin is used and will open up the blood vessels. This widening of the blood vessels allows the heart to do less work requiring less oxygen and blood <ref name="citation2"> </ref>.
Nitroglycerin is commonly used to treat various conditions involving the heart. It used to increase the chances of detecting coronary artery disease when using MR coronary artery imaging (MRCA). Nitroglycerin increases the vessel length allowing coronary artery disease to be more visible under MRCA <ref name="citation3">PMID: 27731913</ref>. Nitroglycerin is also used to treat heart disease and angina which is classified as heart pain. Angina is caused by inadequate flow of oxygen and blood to the heart. To prevent this problem, nitroglycerin is used and will open up the blood vessels. This widening of the blood vessels allows the heart to do less work requiring less oxygen and blood <ref name="citation2"> </ref>.
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</StructureSection>
</StructureSection>
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==delete these later==
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<scene name='74/745476/Nitrodura_bound_to_protein/1'>Nitroglycin</scene>
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<scene name='74/745476/2o0c_molecule/2'>Nitric Oxide bound to a domain found in another organsim</scene>
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<scene name='74/745476/2o0c_molecule_clearer/1'>Nitric Oxide bound to a domain found in another organism-clearer</scene>
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<scene name='74/745476/Guanylate_cyclase/1'>Heterodimeric Catalytic Domain of Wild-type Human Soluble Guanylate Cyclase (protein Nitric Oxide is thought to bind to in Humans)</scene>
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== References ==
== References ==
<references/>
<references/>

Revision as of 20:48, 12 November 2016

NitroDur

4FR8 Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin

Drag the structure with the mouse to rotate

delete these later

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 Tryzelaar, Dr. "Nitroglycerin (NTG)." Nitroglycerin (NTG). N.p., n.d. Web. 16 Oct. 2016”
  2. 2.0 2.1 "NITRO-DUR® TRANSDERMAL DELIVERY SYSTEM." N.p., 3 Oct. 2014. Web. 16 Oct. 2016
  3. "Transderm Nitro (Nitroglycerin): Side Effects, Interactions, Warning, Dosage & Uses." RxList. N.p., 30 Mar. 2009. Web. 12 Nov. 2016.
  4. Mayer, B., and Beretta, M. (2008) The enigma of nitroglycerin bioactivation and nitrate tolerance. News, views, and troubles. Br. J. Pharmacol. 155, 170-184
  5. Lang, Barbara S., Antonius Cf Gorren, Gustav Oberdorfer, M. Wenzl, Cristina M. Furdui, Leslie B. Poole, Bernd Mayer, and Karl Gruber. "Vascular Bioactivation of Nitroglycerin: Reaction Mechanism Revealed by Crystal Structure of Aldehyde Dehydrogenase-2." BMC Pharmacology and Toxicology BMC Pharmacol Toxicol 13.Suppl 1 (2012): n. pag. Web. 1 Nov. 2016.
  6. Lang, Barbara S., Antonius Cf Gorren, Gustav Oberdorfer, M. Wenzl, Cristina M. Furdui, Leslie B. Poole, Bernd Mayer, and Karl Gruber. "Vascular Bioactivation of Nitroglycerin: Reaction Mechanism Revealed by Crystal Structure of Aldehyde Dehydrogenase-2." BMC Pharmacology and Toxicology BMC Pharmacol Toxicol 13.Suppl 1 (2012): n. pag. Web. 1 Nov. 2016.
  7. 7.0 7.1 7.2 Heer T, Reiter S, Trissler M, Hofling B, von Knobelsdorff-Brenkenhoff F, Pilz G. Effect of Nitroglycerin on the Performance of MR Coronary Angiography. J Magn Reson Imaging. 2016 Oct 12. doi: 10.1002/jmri.25483. PMID:27731913 doi:http://dx.doi.org/10.1002/jmri.25483
  8. Chronic Achilles Tendon Injury: An Overview." Hospital for Special Surgery. N.p., 1 June 2011. Web. 30 Oct. 2016
  9. Hunte G, Lloyd-Smith R. Topical glyceryl trinitrate for chronic Achilles tendinopathy. Clin J Sport Med. 2005 Mar;15(2):116-7. PMID:15782065
  10. Haythornthwaite, Jenifer, Dr., and Fredrick Wigley, Dr. "Raynaud's, Finger and Skin Care." Scleroderma Education Program Chapter 2 Raynaud’s, Finger and Skin Care (n.d.): n. pag. Web. 16 Oct. 2016

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