We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

1q8j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1q8j.gif|left|200px]]
[[Image:1q8j.gif|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1q8j |SIZE=350|CAPTION= <scene name='initialview01'>1q8j</scene>, resolution 1.90&Aring;
+
The line below this paragraph, containing "STRUCTURE_1q8j", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=C2F:5-METHYL-5,6,7,8-TETRAHYDROFOLIC+ACID'>C2F</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=HCS:2-AMINO-4-MERCAPTO-BUTYRIC+ACID'>HCS</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_synthase Methionine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.13 2.1.1.13] </span>
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1q8j| PDB=1q8j | SCENE= }}
-
|RELATEDENTRY=[[1q7m|1Q7M]], [[1q7q|1Q7Q]], [[1q7z|1Q7Z]], [[1q85|1Q85]], [[1q8a|1Q8A]]
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q8j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q8j OCA], [http://www.ebi.ac.uk/pdbsum/1q8j PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1q8j RCSB]</span>
+
-
}}
+
'''Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+, Hcy, methyltetrahydrofolate complex)'''
'''Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+, Hcy, methyltetrahydrofolate complex)'''
Line 32: Line 29:
[[Category: Matthews, R G.]]
[[Category: Matthews, R G.]]
[[Category: Romanchuk, G.]]
[[Category: Romanchuk, G.]]
-
[[Category: cobalamin]]
+
[[Category: Cobalamin]]
-
[[Category: folate]]
+
[[Category: Folate]]
-
[[Category: homocysteine]]
+
[[Category: Homocysteine]]
-
[[Category: methionine]]
+
[[Category: Methionine]]
-
[[Category: vitamin b12]]
+
[[Category: Vitamin b12]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 05:59:50 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:10:12 2008''
+

Revision as of 02:59, 3 May 2008

Template:STRUCTURE 1q8j

Cobalamin-dependent methionine synthase (1-566) from Thermotoga maritima (Cd2+, Hcy, methyltetrahydrofolate complex)


Overview

B(12)-dependent methionine synthase (MetH) is a large modular enzyme that utilizes the cobalamin cofactor as a methyl donor or acceptor in three separate reactions. Each methyl transfer occurs at a different substrate-binding domain and requires a different arrangement of modules. In the catalytic cycle, the cobalamin-binding domain carries methylcobalamin to the homocysteine (Hcy) domain to form methionine and returns cob(I)alamin to the folate (Fol) domain for remethylation by methyltetrahydrofolate (CH(3)-H(4)folate). Here, we describe crystal structures of a fragment of MetH from Thermotoga maritima comprising the domains that bind Hcy and CH(3)-H(4)folate. These substrate-binding domains are (beta alpha)(8) barrels packed tightly against one another with their barrel axes perpendicular. The properties of the domain interface suggest that the two barrels remain associated during catalysis. The Hcy and CH(3)-H(4)folate substrates are bound at the C termini of their respective barrels in orientations that position them for reaction with cobalamin, but the two active sites are separated by approximately 50 A. To complete the catalytic cycle, the cobalamin-binding domain must travel back and forth between these distant active sites.

About this Structure

1Q8J is a Single protein structure of sequence from Thermotoga maritima. Full crystallographic information is available from OCA.

Reference

Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase., Evans JC, Huddler DP, Hilgers MT, Romanchuk G, Matthews RG, Ludwig ML, Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3729-36. Epub 2004 Jan 29. PMID:14752199 Page seeded by OCA on Sat May 3 05:59:50 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools