This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

3ai1

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 14:53, 29 December 2021

The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity

Structural highlights

3ai1 is a 2 chain structure with sequence from Atcc 49207. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Related:	3ai2, 3ai3
Gene:	sboA (ATCC 49207)
Activity:	Sorbose reductase, with EC number 1.1.1.289
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

l-Sorbose reductase from Gluconobacter frateurii (SR) is an NADPH-dependent oxidoreductase. SR preferentially catalyzes the reversible reaction between d-sorbitol and l-sorbose with high substrate specificity. To elucidate the structural basis of the catalytic mechanism and the substrate specificity of SR, we have determined the structures of apo-SR, SR in complex with NADPH, and the inactive mutant (His116Leu) of SR in complex with NADPH and l-sorbose at 2.83 A, 1.90 A, and 1.80 A resolutions, respectively. Our results show that SR belongs to the short-chain dehydrogenase/reductase (SDR) family and forms a tetrameric structure. Although His116 is not conserved among SDR family enzymes, the structures of SR have revealed that His116 is important for the stabilization of the proton relay system and for active-site conformation as a fourth catalytic residue. In the ternary complex structure, l-sorbose is recognized by 11 hydrogen bonds. Site-directed mutagenesis of residues around the l-sorbose-binding site has shown that the loss of almost full enzymatic activity was caused by not only the substitution of putative catalytic residues but also the substitution of the residue used for the recognition of the C4 hydroxyl groups of l-sorbose (Glu154) and of the residues used for the construction of the substrate-binding pocket (Cys146 and Gly188). The recognition of the C4 hydroxyl group of l-sorbose would be indispensable for the substrate specificity of SR, which recognizes only l-sorbose and d-sorbitol but not other sugars. Our results indicated that these residues were crucial for the substrate recognition and specificity of SR.

The crystal structure of l-sorbose reductase from Gluconobacter frateurii complexed with NADPH and l-sorbose.,Kubota K, Nagata K, Okai M, Miyazono K, Soemphol W, Ohtsuka J, Yamamura A, Saichana N, Toyama H, Matsushita K, Tanokura M J Mol Biol. 2011 Apr 8;407(4):543-55. Epub 2011 Jan 26. PMID:21277857^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kubota K, Nagata K, Okai M, Miyazono K, Soemphol W, Ohtsuka J, Yamamura A, Saichana N, Toyama H, Matsushita K, Tanokura M. The crystal structure of l-sorbose reductase from Gluconobacter frateurii complexed with NADPH and l-sorbose. J Mol Biol. 2011 Apr 8;407(4):543-55. Epub 2011 Jan 26. PMID:21277857 doi:10.1016/j.jmb.2011.01.008

1 Structural highlights
2 Publication Abstract from PubMed
3 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3ai1"

@@ Line 1: / Line 1: @@
 ==The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity==
-<StructureSection load='3ai1' size='340' side='right' caption='[[3ai1]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
+<StructureSection load='3ai1' size='340' side='right'caption='[[3ai1]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3ai1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_49207 Atcc 49207]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AI1 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3ai1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_49207 Atcc 49207]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AI1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AI1 FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ai2|3ai2]], [[3ai3|3ai3]]</td></tr>
+</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ai2|3ai2]], [[3ai3|3ai3]]</div></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sboA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=38308 ATCC 49207])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sboA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=38308 ATCC 49207])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sorbose_reductase Sorbose reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.289 1.1.1.289] </span></td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Sorbose_reductase Sorbose reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.289 1.1.1.289] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ai1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ai1 OCA], [http://pdbe.org/3ai1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ai1 RCSB], [http://www.ebi.ac.uk/pdbsum/3ai1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ai1 ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ai1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ai1 OCA], [https://pdbe.org/3ai1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ai1 RCSB], [https://www.ebi.ac.uk/pdbsum/3ai1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ai1 ProSAT]</span></td></tr>
 </table>
 <div style="background-color:#fffaf0;">
@@ Line 23: / Line 23: @@
 </StructureSection>
 [[Category: Atcc 49207]]
+[[Category: Large Structures]]
 [[Category: Sorbose reductase]]
 [[Category: Kubota, K]]

3ai1

From Proteopedia

Revision as of 14:53, 29 December 2021

The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity

Structural highlights

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox