This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3qoy
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of ribosomal protein L1 from Aquifex aeolicus== | ==Crystal structure of ribosomal protein L1 from Aquifex aeolicus== | ||
| - | <StructureSection load='3qoy' size='340' side='right' caption='[[3qoy]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='3qoy' size='340' side='right'caption='[[3qoy]], [[Resolution|resolution]] 2.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3qoy]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3qoy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QOY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QOY FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1ad2|1ad2]], [[1cjs|1cjs]], [[1zho|1zho]], [[1mzp|1mzp]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ad2|1ad2]], [[1cjs|1cjs]], [[1zho|1zho]], [[1mzp|1mzp]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aq_1935, rplA ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aq_1935, rplA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qoy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qoy OCA], [https://pdbe.org/3qoy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qoy RCSB], [https://www.ebi.ac.uk/pdbsum/3qoy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qoy ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/RL1_AQUAE RL1_AQUAE]] Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.[HAMAP-Rule:MF_01318] Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.[HAMAP-Rule:MF_01318] |
==See Also== | ==See Also== | ||
| Line 17: | Line 17: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Aquifex aeolicus huber and stetter 2001]] | [[Category: Aquifex aeolicus huber and stetter 2001]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Gabdulkhakov, A G]] | [[Category: Gabdulkhakov, A G]] | ||
[[Category: Garber, M B]] | [[Category: Garber, M B]] | ||
Revision as of 06:17, 8 June 2022
Crystal structure of ribosomal protein L1 from Aquifex aeolicus
| |||||||||||
Categories: Aquifex aeolicus huber and stetter 2001 | Large Structures | Gabdulkhakov, A G | Garber, M B | Nevskaya, N A | Nikonov, S V | Nikonova, E U | Shkliaeva, A A | Tishchenko, S V | Beta-alpha-beta | Mrna | Regulation of translation | Ribosomal protein | Ribosomal rna | Rrna binding | Structural constituent of ribosome | Translation
