4hp1

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==Crystal structure of Tet3 in complex with a non-CpG dsDNA==
==Crystal structure of Tet3 in complex with a non-CpG dsDNA==
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<StructureSection load='4hp1' size='340' side='right' caption='[[4hp1]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
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<StructureSection load='4hp1' size='340' side='right'caption='[[4hp1]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4hp1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Silurana_(xenopus)_tropicalis Silurana (xenopus) tropicalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HP1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HP1 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4hp1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_tropicalis Xenopus tropicalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HP1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HP1 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hp1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hp1 OCA], [https://pdbe.org/4hp1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hp1 RCSB], [https://www.ebi.ac.uk/pdbsum/4hp1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hp1 ProSAT]</span></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4hp3|4hp3]]</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">tet3, LOC100036628 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8364 Silurana (Xenopus) tropicalis])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hp1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hp1 OCA], [http://pdbe.org/4hp1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4hp1 RCSB], [http://www.ebi.ac.uk/pdbsum/4hp1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4hp1 ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TET3_XENTR TET3_XENTR] Dioxygenase that catalyzes the conversion of the modified genomic base 5-methylcytosine (5mC) into 5-hydroxymethylcytosine (5hmC) and plays a key role in epigenetic chromatin reprogramming during embryonic development. Conversion of 5mC into 5hmC probably constitutes the first step in cytosine demethylation. Selectively binds to the promoter region of target genes and contributes to regulate the expression of numerous developmental genes, including pax6, rax, sox9 and six3. May also contribute to the regulation of target genes in ways that do not require its enzyme activity.<ref>PMID:23217707</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Arrowsmith, C H]]
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[[Category: Large Structures]]
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[[Category: Bian, C]]
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[[Category: Xenopus tropicalis]]
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[[Category: Bountra, C]]
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[[Category: Arrowsmith CH]]
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[[Category: Chao, X]]
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[[Category: Bian C]]
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[[Category: Edwards, A M]]
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[[Category: Bountra C]]
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[[Category: Min, J]]
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[[Category: Chao X]]
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[[Category: Structural genomic]]
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[[Category: Edwards AM]]
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[[Category: Tempel, W]]
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[[Category: Min J]]
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[[Category: Cxxc]]
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[[Category: Tempel W]]
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[[Category: Dna binding protein-dna complex]]
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[[Category: Dna methylation]]
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[[Category: Sgc]]
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Revision as of 08:30, 3 November 2022

Crystal structure of Tet3 in complex with a non-CpG dsDNA

PDB ID 4hp1

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