5tvy
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Computationally Designed Fentanyl Binder - Fen49== | |
| + | <StructureSection load='5tvy' size='340' side='right' caption='[[5tvy]], [[Resolution|resolution]] 1.00Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5tvy]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5TVY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5TVY FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XPE:3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL'>XPE</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5tvv|5tvv]]</td></tr> | ||
| + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5tvy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5tvy OCA], [http://pdbe.org/5tvy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5tvy RCSB], [http://www.ebi.ac.uk/pdbsum/5tvy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5tvy ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We describe the computational design of proteins that bind the potent analgesic fentanyl. Our approach employs a fast docking algorithm to find shape complementary ligand placement in protein scaffolds, followed by design of the surrounding residues to optimize binding affinity. Co-crystal structures of the highest affinity binder reveal a highly preorganized binding site, and an overall architecture and ligand placement in close agreement with the design model. We use the designs to generate plant sensors for fentanyl by coupling ligand binding to design stability. The method should be generally useful for detecting toxic hydrophobic compounds in the environment. | ||
| - | + | Computational design of environmental sensors for the potent opioid fentanyl.,Bick MJ, Greisen PJ, Morey KJ, Antunes MS, La D, Sankaran B, Reymond L, Johnsson K, Medford JI, Baker D Elife. 2017 Sep 19;6. pii: e28909. doi: 10.7554/eLife.28909. PMID:28925919<ref>PMID:28925919</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| + | <div class="pdbe-citations 5tvy" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Endo-1,4-beta-xylanase]] | ||
| + | [[Category: Antunes, M S]] | ||
| + | [[Category: Baker, D]] | ||
| + | [[Category: Bick, M J]] | ||
| + | [[Category: Greisen, P J]] | ||
| + | [[Category: Johnsson, K]] | ||
| + | [[Category: La, D]] | ||
| + | [[Category: Medford, J I]] | ||
| + | [[Category: Morey, K J]] | ||
| + | [[Category: Reymond, L]] | ||
| + | [[Category: Sankaran, B]] | ||
| + | [[Category: Computational design]] | ||
| + | [[Category: Fentanyl]] | ||
| + | [[Category: Hydrolase]] | ||
Revision as of 09:28, 4 October 2017
Computationally Designed Fentanyl Binder - Fen49
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