5m2s

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5m2s is ON HOLD until Paper Publication
+
==R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin==
 +
<StructureSection load='5m2s' size='340' side='right' caption='[[5m2s]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5m2s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_19208 Atcc 19208] and [http://en.wikipedia.org/wiki/Ruminococcus_flavefaciens_fd-1 Ruminococcus flavefaciens fd-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M2S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M2S FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5m2o|5m2o]], [[5aoz|5aoz]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">scaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1265 ATCC 19208]), glycoside hydrolase family 9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=641112 Ruminococcus flavefaciens FD-1])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m2s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m2s OCA], [http://pdbe.org/5m2s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m2s RCSB], [http://www.ebi.ac.uk/pdbsum/5m2s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m2s ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
ABTRACT: Cellulosomes are sophisticated multi-enzymatic nanomachines produced by anaerobes to effectively deconstruct plant structural carbohydrates. Cellulosome assembly involves the binding of enzyme-borne dockerins (Doc) to repeated cohesin (Coh) modules located in a non-catalytic scaffoldin. Docs appended to cellulosomal enzymes generally present two similar Coh-binding interfaces supporting a dual-binding mode, which may confer increased positional adjustment of the different complex components. Ruminococcus flavefaciens' cellulosome is assembled from a repertoire of 223 Doc-containing proteins classified into 6 groups. Recent studies revealed that Docs of groups 3 and 6 are recruited to the cellulosome via a single-binding mode mechanism with an adaptor scaffoldin. To investigate the extent to which the single-binding mode contributes to the assembly of R. flavefaciens cellulosome, the structures of two group 1 Docs bound to Cohs of primary (ScaA) and adaptor (ScaB) scaffoldins were solved. The data revealed that group 1 Docs display a conserved mechanism of Coh recognition involving a single-binding mode. Therefore, in contrast to all cellulosomes described to date, the assembly of R. flavefaciens cellulosome involves single but not dual-binding mode Docs. Thus, this work reveals a novel mechanism of cellulosome assembly and challenges the ubiquitous implication of the dual-binding mode in the acquisition of cellulosome flexibility.
-
Authors: Bule, P., Najmudin, S., Carvalho, A.L., Fontes, C.M.G.A.
+
Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes.,Bule P, Alves VD, Israeli-Ruimy V, Carvalho AL, Ferreira LM, Smith SP, Gilbert HJ, Najmudin S, Bayer EA, Fontes CM Sci Rep. 2017 Apr 7;7(1):759. doi: 10.1038/s41598-017-00919-w. PMID:28389644<ref>PMID:28389644</ref>
-
Description: R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Najmudin, S]]
+
<div class="pdbe-citations 5m2s" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Atcc 19208]]
 +
[[Category: Ruminococcus flavefaciens fd-1]]
[[Category: Bule, P]]
[[Category: Bule, P]]
-
[[Category: Carvalho, A.L]]
+
[[Category: Carvalho, A L]]
-
[[Category: Fontes, C.M.G.A]]
+
[[Category: Fontes, C M.G A]]
 +
[[Category: Najmudin, S]]
 +
[[Category: Cell adhesion]]
 +
[[Category: Cellulosome]]
 +
[[Category: Cohesin]]
 +
[[Category: Complex]]
 +
[[Category: Dockerin]]
 +
[[Category: Protein binding]]
 +
[[Category: R. flavefacien]]

Revision as of 06:29, 16 November 2017

R. flavefaciens' third ScaB cohesin in complex with a group 1 dockerin

5m2s, resolution 1.70Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools