Sandbox Reserved 1072

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{{Sandbox_Reserved_Butler_CH462_Sp2015_#}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
{{Sandbox_Reserved_Butler_CH462_Sp2015_#}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
==Diguanylate Cyclase DgcZ from Escherichia coli==
==Diguanylate Cyclase DgcZ from Escherichia coli==
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<StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''>
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<StructureSection load='4H54' size='340' side='right' caption='Diguanylate Cyclase DgcZ' scene=''>
This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
This is a default text for your page ''''''. Click above on '''edit this page''' to modify. Be careful with the &lt; and &gt; signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
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====3His/1Cys Motif====
====3His/1Cys Motif====
== Mechanism of Action ==
== Mechanism of Action ==
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<scene name='69/694239/Hydrophobicity_int_residues/1'>Hydrophobic regions</scene> on the alpha helices of the zinc binding domain participate in van der waals interactions that induce a conformational change in the protein when zinc binds.
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<scene name='69/694239/Hydrophobicity_int_residues/1'>Hydrophobic regions</scene> on the alpha helices of the zinc binding domain participate in van der waals interactions that induce a conformational change in the protein when zinc binds. When Zinc binds, the <scene name='69/694239/Czbd_with_helices_labeled/2'>𝝰1 helix</scene> becomes straightened, burying nonpolar side-chain residues, influencing activity of DgcZ
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== Zinc Ligand(s) ==
== Zinc Ligand(s) ==
The two <scene name='69/694239/Zinc_binding_domain/1'>Zinc binding domains</scene> of Diguanylate Cyclase binds a single zinc ion each, for a total of two zinc ions.
The two <scene name='69/694239/Zinc_binding_domain/1'>Zinc binding domains</scene> of Diguanylate Cyclase binds a single zinc ion each, for a total of two zinc ions.

Revision as of 17:44, 24 March 2017

This Sandbox is Reserved from 02/09/2015, through 05/31/2016 for use in the course "CH462: Biochemistry 2" taught by Geoffrey C. Hoops at the Butler University. This reservation includes Sandbox Reserved 1051 through Sandbox Reserved 1080.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Diguanylate Cyclase DgcZ from Escherichia coli

Diguanylate Cyclase DgcZ

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References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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