Sandbox Reserved 1072

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 11: Line 11:
Diguanylate Cyclase exhibits C2 symmetry down its vertical axis.
Diguanylate Cyclase exhibits C2 symmetry down its vertical axis.
===GGEEF Domain===
===GGEEF Domain===
-
The <scene name='69/694239/Ggeef_domain_dgcz/2'>GGEEF</scene> Domain of Diguanylate Cyclase is the active site of the protein and has two amino acid sequences of GGEEF which allows for binding of two GTP molecules. The Active site can be divided up into two enzymatic <scene name='69/694239/Ggeef_domain_half_site_dgcz/1'>half-sites</scene>, each with a GGEEF domain for binding a single GTP molecule. DgcZ binds the guanine base of GTP through hydrogen bonds to <scene name='69/694239/Gtp_guanine_bonds_asn_asp_dgcz/4'>Asn173 and Asp 182</scene> A Magnesium ion acts as a cofactor for each
+
The <scene name='69/694239/Ggeef_domain_dgcz/2'>GGEEF</scene> Domain of Diguanylate Cyclase is the active site of the protein and has two amino acid sequences of GGEEF which allows for binding of two GTP molecules. The Active site can be divided up into two enzymatic <scene name='69/694239/Ggeef_domain_half_site_dgcz/1'>half-sites</scene>, each with a GGEEF domain for binding a single GTP molecule. DgcZ binds the guanine base of GTP through hydrogen bonds to <scene name='69/694239/Gtp_guanine_bonds_asn_asp_dgcz/4'>Asn173 and Asp 182</scene> A <scene name='69/694239/Gtp_magnesium_cofactors_dgcz/1'>Magnesium ion</scene> acts as a cofactor for each half-site, helping to stabilize the negative charges on the phosphates of GTP.
===Zinc Binding Domain===
===Zinc Binding Domain===
Officially residues 19-90.
Officially residues 19-90.

Revision as of 01:46, 31 March 2017

This Sandbox is Reserved from 02/09/2015, through 05/31/2016 for use in the course "CH462: Biochemistry 2" taught by Geoffrey C. Hoops at the Butler University. This reservation includes Sandbox Reserved 1051 through Sandbox Reserved 1080.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Diguanylate Cyclase DgcZ from Escherichia coli

Diguanylate Cyclase DgcZ

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1072"
Personal tools