This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5xat
From Proteopedia
(Difference between revisions)
m (Protected "5xat" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS== | |
| + | <StructureSection load='5xat' size='340' side='right' caption='[[5xat]], [[Resolution|resolution]] 3.76Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5xat]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus pneumoniae" (schroeter 1886) flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XAT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XAT FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
| + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5x9r|5x9r]], [[5xar|5xar]], [[5xas|5xas]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">citS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=573 "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xat OCA], [http://pdbe.org/5xat PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xat RCSB], [http://www.ebi.ac.uk/pdbsum/5xat PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xat ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [[http://www.uniprot.org/uniprot/CITN_KLEPN CITN_KLEPN]] Uptake of citrate across the boundary membrane with the concomitant uptake of a sodium ion (symport system). | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The sodium-dependent citrate transporter of Klebsiella pneumoniae (KpCitS) belongs to the 2-hydroxycarboxylate transporter (2-HCT) family and allows the cell to use citrate as sole carbon and energy source in anaerobic conditions. Here we present crystal structures of KpCitS in citrate-bound outward-facing, citrate-bound asymmetric, and citrate-free inward-facing state. The structures reveal that the KpCitS dimerization domain remains stationary throughout the transport cycle due to a hydrogen bond network as well as extensive hydrophobic interactions. In contrast, its transport domain undergoes a ~35 degrees rigid-body rotation and a ~17 A translocation perpendicular to the membrane to expose the substrate-binding site alternately to either side of the membrane. Furthermore, homology models of two other 2-HCT proteins based on the KpCitS structure offer structural insights into their differences in substrate specificity at a molecular level. On the basis of our results and previous biochemical data, we propose that the activity of the 2-HCT CitS involves an elevator-like movement in which the transport domain itself traverses the lipid bilayer, carrying the substrate into the cell in a sodium-dependent manner. | ||
| - | + | Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS.,Kim JW, Kim S, Kim S, Lee H, Lee JO, Jin MS Sci Rep. 2017 May 31;7(1):2548. doi: 10.1038/s41598-017-02794-x. PMID:28566738<ref>PMID:28566738</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5xat" style="background-color:#fffaf0;"></div> |
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Jin, M S]] | ||
| + | [[Category: Kim, J W]] | ||
[[Category: Kim, S]] | [[Category: Kim, S]] | ||
| - | [[Category: Lee, | + | [[Category: Lee, H]] |
| - | [[Category: | + | [[Category: Lee, J O]] |
| - | [[Category: | + | [[Category: 2-hct]] |
| + | [[Category: Citrate transporter]] | ||
| + | [[Category: Cit]] | ||
| + | [[Category: Sodium/citrate symporter]] | ||
| + | [[Category: Transport protein]] | ||
Revision as of 10:10, 16 November 2017
Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
| |||||||||||
Categories: Jin, M S | Kim, J W | Kim, S | Lee, H | Lee, J O | 2-hct | Citrate transporter | Cit | Sodium/citrate symporter | Transport protein
