1uvj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1uvj.jpg|left|200px]]
[[Image:1uvj.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1uvj |SIZE=350|CAPTION= <scene name='initialview01'>1uvj</scene>, resolution 1.90&Aring;
+
The line below this paragraph, containing "STRUCTURE_1uvj", creates the "Structure Box" on the page.
-
|SITE= <scene name='pdbsite=1:The+Three+Conserved+Active+Site+Aspartates+For+Chain+C'>1</scene> and <scene name='pdbsite=CA1:Mn+Binding+Site+For+Chain+C'>CA1</scene>
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=C:CYTIDINE-5&#39;-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1uvj| PDB=1uvj | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uvj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uvj OCA], [http://www.ebi.ac.uk/pdbsum/1uvj PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1uvj RCSB]</span>
+
-
}}
+
'''THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 WITH 7NT RNA'''
'''THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 WITH 7NT RNA'''
Line 19: Line 16:
==About this Structure==
==About this Structure==
-
1UVJ is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UVJ OCA].
+
1UVJ is a [[Protein complex]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UVJ OCA].
==Reference==
==Reference==
Line 30: Line 27:
[[Category: Salgado, P S.]]
[[Category: Salgado, P S.]]
[[Category: Stuart, D I.]]
[[Category: Stuart, D I.]]
-
[[Category: oligonucleotide]]
+
[[Category: Oligonucleotide]]
-
[[Category: polymerase]]
+
[[Category: Polymerase]]
-
[[Category: rna-dependent rna polymerase]]
+
[[Category: Rna-dependent rna polymerase]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 11:44:36 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:15:50 2008''
+

Revision as of 08:44, 3 May 2008

Template:STRUCTURE 1uvj

THE STRUCTURAL BASIS FOR RNA SPECIFICITY AND CA2 INHIBITION OF AN RNA-DEPENDENT RNA POLYMERASE PHI6P2 WITH 7NT RNA


Overview

The RNA-dependent RNA polymerase of bacteriophage phi6 transcribes mRNA from the three segments of the dsRNA viral genome. We have cocrystallized RNA oligonucleotides with the polymerase, revealing the mode of binding of RNA templates. This binding is somewhat different from that previously seen for DNA oligomers, leading to additional RNA-protein hydrogen bonds, consistent with a preference for RNA. Activation of the RNA/polymerase complex by the addition of substrate and Mg2+ initiates a single round of reaction within the crystal to form a dead-end complex that partially collapses within the enzyme active site. By replacing Mg2+ with Ca2+, we have been able to capture the inhibited complex which shows distortion that explains the structural basis for the inhibition of such polymerases by Ca2+.

About this Structure

1UVJ is a Protein complex structure. Full crystallographic information is available from OCA.

Reference

The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase., Salgado PS, Makeyev EV, Butcher SJ, Bamford DH, Stuart DI, Grimes JM, Structure. 2004 Feb;12(2):307-16. PMID:14962391 Page seeded by OCA on Sat May 3 11:44:36 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools