1vub
From Proteopedia
| Line 1: | Line 1: | ||
[[Image:1vub.jpg|left|200px]] | [[Image:1vub.jpg|left|200px]] | ||
| - | + | <!-- | |
| - | + | The line below this paragraph, containing "STRUCTURE_1vub", creates the "Structure Box" on the page. | |
| - | + | You may change the PDB parameter (which sets the PDB file loaded into the applet) | |
| - | + | or the SCENE parameter (which sets the initial scene displayed when the page is loaded), | |
| - | + | or leave the SCENE parameter empty for the default display. | |
| - | + | --> | |
| - | + | {{STRUCTURE_1vub| PDB=1vub | SCENE= }} | |
| - | | | + | |
| - | | | + | |
| - | }} | + | |
'''CCDB, A TOPOISOMERASE POISON FROM E. COLI''' | '''CCDB, A TOPOISOMERASE POISON FROM E. COLI''' | ||
| Line 33: | Line 30: | ||
[[Category: Poortmans, F.]] | [[Category: Poortmans, F.]] | ||
[[Category: Wyns, L.]] | [[Category: Wyns, L.]] | ||
| - | [[Category: | + | [[Category: Ccdb]] |
| - | [[Category: | + | [[Category: Plasmid]] |
| - | [[Category: | + | [[Category: Plasmid addiction]] |
| - | [[Category: | + | [[Category: Topoisomerase poison]] |
| - | + | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 12:53:02 2008'' | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | + | |
Revision as of 09:53, 3 May 2008
CCDB, A TOPOISOMERASE POISON FROM E. COLI
Overview
The crystal structure of CcdB, a protein that poisons Escherichia coli gyrase, was determined in three crystal forms. The protein consists of a five-stranded antiparallel beta-pleated sheet followed by a C-terminal alpha-helix. In one of the loops of the sheet, a second small three-stranded antiparallel beta-sheet is inserted that sticks out of the molecule as a wing. This wing contains the LysC proteolytic cleavage site that is protected by CcdA and, therefore, forms a likely CcdA recognition site. A dimer is formed by sheet extension and by extensive hydrophobic contacts involving three of the five methionine residues and the C terminus of the alpha-helix. The surface of the dimer on the side of the alpha-helix is overall negatively charged, while the opposite side as well as the wing sheet is dominated by positive charges. We propose that the CcdB dimer binds into the central hole of the 59 kDa N-terminal fragment of GyrA, after disruption of the head dimer interface of GyrA.
About this Structure
1VUB is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.
Reference
Crystal structure of CcdB, a topoisomerase poison from E. coli., Loris R, Dao-Thi MH, Bahassi EM, Van Melderen L, Poortmans F, Liddington R, Couturier M, Wyns L, J Mol Biol. 1999 Jan 29;285(4):1667-77. PMID:9917404 Page seeded by OCA on Sat May 3 12:53:02 2008
