This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

5jho

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 06:54, 31 January 2018

Crystal structure of the regulatory domain of the sodium driven chloride bicarbonate exchanger.

Structural highlights

5jho is a 2 chain structure with sequence from Human. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:	SLC4A8, KIAA0739, NBC, NBC3, NDCBE1 (HUMAN)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[S4A8_HUMAN] Mediates electroneutral sodium- and carbonate-dependent chloride-HCO3(-) exchange with a Na(+):HCO3(-) stoichiometry of 2:1. Plays a major role in pH regulation in neurons. May be involved in cell pH regulation by transporting HCO3(-) from blood to cell. Enhanced expression in severe acid stress could be important for cell survival by mediating the influx of HCO3(-) into the cells. Also mediates lithium-dependent HCO3(-) cotransport. May be regulated by osmolarity.^[1] ^[2]

Publication Abstract from PubMed

The sodium-driven chloride/bicarbonate exchanger (NDCBE) is essential for maintaining homeostatic pH in neurons. The crystal structure at 2.8 A resolution of the regulatory N-terminal domain of human NDCBE represents the first crystal structure of an electroneutral sodium-bicarbonate cotransporter. The crystal structure forms an equivalent dimeric interface as observed for the cytoplasmic domain of Band 3, and thus establishes that the consensus motif VTVLP is the key minimal dimerization motif. The VTVLP motif is highly conserved and likely to be the physiologically relevant interface for all other members of the SLC4 family. A novel conserved Zn2+-binding motif present in the N-terminal domain of NDCBE is identified and characterized in vitro. Cellular studies confirm the Zn2+ dependent transport of two electroneutral bicarbonate transporters, NCBE and NBCn1. The Zn2+ site is mapped to a cluster of histidines close to the conserved ETARWLKFEE motif and likely plays a role in the regulation of this important motif. The combined structural and bioinformatics analysis provides a model that predicts with additional confidence the physiologically relevant interface between the cytoplasmic domain and the transmembrane domain.

The crystal structure of the regulatory domain of the human sodium-driven chloride/bicarbonate exchanger.,Alvadia CM, Sommer T, Bjerregaard-Andersen K, Damkier HH, Montrasio M, Aalkjaer C, Morth JP Sci Rep. 2017 Sep 21;7(1):12131. doi: 10.1038/s41598-017-12409-0. PMID:28935959^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Amlal H, Burnham CE, Soleimani M. Characterization of Na+/HCO-3 cotransporter isoform NBC-3. Am J Physiol. 1999 Jun;276(6 Pt 2):F903-13. PMID:10362779
↑ Grichtchenko II, Choi I, Zhong X, Bray-Ward P, Russell JM, Boron WF. Cloning, characterization, and chromosomal mapping of a human electroneutral Na(+)-driven Cl-HCO3 exchanger. J Biol Chem. 2001 Mar 16;276(11):8358-63. Epub 2000 Dec 27. PMID:11133997 doi:http://dx.doi.org/10.1074/jbc.C000716200
↑ Alvadia CM, Sommer T, Bjerregaard-Andersen K, Damkier HH, Montrasio M, Aalkjaer C, Morth JP. The crystal structure of the regulatory domain of the human sodium-driven chloride/bicarbonate exchanger. Sci Rep. 2017 Sep 21;7(1):12131. doi: 10.1038/s41598-017-12409-0. PMID:28935959 doi:http://dx.doi.org/10.1038/s41598-017-12409-0

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5jho"

@@ Line 3: / Line 3: @@
 <StructureSection load='5jho' size='340' side='right' caption='[[5jho]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5jho]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JHO FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5jho]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JHO FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jho OCA], [http://pdbe.org/5jho PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jho RCSB], [http://www.ebi.ac.uk/pdbsum/5jho PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jho ProSAT]</span></td></tr>
+</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SLC4A8, KIAA0739, NBC, NBC3, NDCBE1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jho OCA], [http://pdbe.org/5jho PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jho RCSB], [http://www.ebi.ac.uk/pdbsum/5jho PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jho ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
+[[Category: Human]]
 [[Category: Alvadia, C]]
 [[Category: Bjerregaard-Andersen, K]]

5jho

From Proteopedia

Revision as of 06:54, 31 January 2018

Crystal structure of the regulatory domain of the sodium driven chloride bicarbonate exchanger.

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox