This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2p5q
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of the poplar glutathione peroxidase 5 in the reduced form== | ==Crystal structure of the poplar glutathione peroxidase 5 in the reduced form== | ||
| - | <StructureSection load='2p5q' size='340' side='right' caption='[[2p5q]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='2p5q' size='340' side='right'caption='[[2p5q]], [[Resolution|resolution]] 2.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2p5q]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2p5q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Populus_balsamifera_subsp._trichocarpa_x_populus_deltoides Populus balsamifera subsp. trichocarpa x populus deltoides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5Q FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2p5r|2p5r]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2p5r|2p5r]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PtGPX5 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PtGPX5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3695 Populus balsamifera subsp. trichocarpa x Populus deltoides])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5q OCA], [https://pdbe.org/2p5q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5q RCSB], [https://www.ebi.ac.uk/pdbsum/2p5q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5q ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 13: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5q_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5q_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 28: | Line 28: | ||
</div> | </div> | ||
<div class="pdbe-citations 2p5q" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 2p5q" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Glutathione peroxidase|Glutathione peroxidase]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Populus balsamifera subsp. trichocarpa x populus deltoides]] | [[Category: Populus balsamifera subsp. trichocarpa x populus deltoides]] | ||
[[Category: Aubry, A]] | [[Category: Aubry, A]] | ||
Revision as of 15:16, 17 June 2021
Crystal structure of the poplar glutathione peroxidase 5 in the reduced form
| |||||||||||

