1yz9

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[[Image:1yz9.gif|left|200px]]
[[Image:1yz9.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 1yz9 |SIZE=350|CAPTION= <scene name='initialview01'>1yz9</scene>, resolution 2.10&Aring;
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The line below this paragraph, containing "STRUCTURE_1yz9", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=A:ADENOSINE-5&#39;-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5&#39;-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5&#39;-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_III Ribonuclease III], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.26.3 3.1.26.3] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE= rnc ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 Aquifex aeolicus])
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|DOMAIN=
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{{STRUCTURE_1yz9| PDB=1yz9 | SCENE= }}
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|RELATEDENTRY=[[1i4s|1I4S]], [[1jfz|1JFZ]], [[1o0w|1O0W]], [[1rc5|1RC5]], [[1rc7|1RC7]], [[1yyk|1YYK]], [[1yyo|1YYO]], [[1yyw|1YYW]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yz9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yz9 OCA], [http://www.ebi.ac.uk/pdbsum/1yz9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1yz9 RCSB]</span>
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}}
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'''Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution'''
'''Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution'''
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[[Category: Tropea, J E.]]
[[Category: Tropea, J E.]]
[[Category: Waugh, D S.]]
[[Category: Waugh, D S.]]
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[[Category: double-stranded rna]]
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[[Category: Double-stranded rna]]
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[[Category: endonucleolytic cleavage]]
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[[Category: Endonucleolytic cleavage]]
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[[Category: ribonuclease iii]]
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[[Category: Ribonuclease iii]]
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[[Category: rna interference]]
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[[Category: Rna interference]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:59:33 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 01:26:46 2008''
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Revision as of 13:59, 3 May 2008

Template:STRUCTURE 1yz9

Crystal structure of RNase III mutant E110Q from Aquifex aeolicus complexed with double stranded RNA at 2.1-Angstrom Resolution


Overview

Bacterial ribonuclease III (RNase III) can affect RNA structure and gene expression in either of two ways: as a processing enzyme that cleaves double-stranded (ds) RNA, or as a binding protein that binds but does not cleave dsRNA. We previously proposed a model of the catalytic complex of RNase III with dsRNA based on three crystal structures, including the endonuclease domain of RNase III with and without bound metal ions and a dsRNA binding protein complexed with dsRNA. We also reported a noncatalytic assembly observed in the crystal structure of an RNase III mutant, which binds but does not cleave dsRNA, complexed with dsRNA. We hypothesize that the RNase III*dsRNA complex can exist in two functional forms, a catalytic complex and a noncatalytic assembly, and that in between the two forms there may be intermediate states. Here, we present four crystal structures of RNase III complexed with dsRNA, representing possible intermediates.

About this Structure

1YZ9 is a Single protein structure of sequence from Aquifex aeolicus. Full crystallographic information is available from OCA.

Reference

Intermediate states of ribonuclease III in complex with double-stranded RNA., Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, Ji X, Structure. 2005 Oct;13(10):1435-42. PMID:16216575 Page seeded by OCA on Sat May 3 16:59:33 2008

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