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3dkx
From Proteopedia
(Difference between revisions)
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==Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution== | ==Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution== | ||
| - | <StructureSection load='3dkx' size='340' side='right' caption='[[3dkx]], [[Resolution|resolution]] 2.70Å' scene=''> | + | <StructureSection load='3dkx' size='340' side='right'caption='[[3dkx]], [[Resolution|resolution]] 2.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3dkx]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3dkx]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"streptoccocus_de_la_mammite"_nocard_and_mollereau_1887 "streptoccocus de la mammite" nocard and mollereau 1887]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKX FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dky|3dky]], [[2hw0|2hw0]], [[1ksx|1ksx]], [[1ksy|1ksy]], [[2gxa|2gxa]], [[1rz9|1rz9]], [[1l2m|1l2m]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3dky|3dky]], [[2hw0|2hw0]], [[1ksx|1ksx]], [[1ksy|1ksy]], [[2gxa|2gxa]], [[1rz9|1rz9]], [[1l2m|1l2m]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">repB ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">repB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1311 "Streptoccocus de la mammite" Nocard and Mollereau 1887])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dkx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dkx OCA], [https://pdbe.org/3dkx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dkx RCSB], [https://www.ebi.ac.uk/pdbsum/3dkx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dkx ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/REPB_STRAG REPB_STRAG]] Is essential for plasmid replication. Nicks the positive strand at the plus origin of replication. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/3dkx_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/3dkx_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Streptoccocus de la mammite nocard and mollereau 1887]] | [[Category: Streptoccocus de la mammite nocard and mollereau 1887]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Blanco, A G]] | [[Category: Blanco, A G]] | ||
[[Category: Boer, D R]] | [[Category: Boer, D R]] | ||
Revision as of 08:01, 9 February 2022
Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution
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Categories: Streptoccocus de la mammite nocard and mollereau 1887 | Large Structures | Blanco, A G | Boer, D R | Coll, M | Espinosa, M | Gomis-Ruth, F X | Ruiz-Maso, J A | Solar, G Del | Uson, I | Vives-Llacer, M | Dna replication | Flexible nuclease domain | Hexamer | Nuclease | Plasmid | Plasmid replication | Replication | Replication initiation | Replication initiator
