3gfx
From Proteopedia
(Difference between revisions)
Line 1: | Line 1: | ||
==Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex== | ==Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex== | ||
- | <StructureSection load='3gfx' size='340' side='right' caption='[[3gfx]], [[Resolution|resolution]] 2.40Å' scene=''> | + | <StructureSection load='3gfx' size='340' side='right'caption='[[3gfx]], [[Resolution|resolution]] 2.40Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3gfx]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3gfx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klep7 Klep7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GFX FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gfy|3gfy]], [[3gfz|3gfz]], [[3gg0|3gg0]], [[3gg1|3gg1]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3gfy|3gfy]], [[3gfz|3gfz]], [[3gg0|3gg0]], [[3gg1|3gg1]]</div></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blrp1, KPN78578_15680, KPN_01598 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blrp1, KPN78578_15680, KPN_01598 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272620 KLEP7])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gfx OCA], [https://pdbe.org/3gfx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gfx RCSB], [https://www.ebi.ac.uk/pdbsum/3gfx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gfx ProSAT]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
Line 13: | Line 13: | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
- | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/3gfx_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/3gfx_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
Line 28: | Line 28: | ||
</div> | </div> | ||
<div class="pdbe-citations 3gfx" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 3gfx" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]] | ||
+ | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
Line 33: | Line 37: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Klep7]] | [[Category: Klep7]] | ||
+ | [[Category: Large Structures]] | ||
[[Category: Barends, T]] | [[Category: Barends, T]] | ||
[[Category: Beitlich, T]] | [[Category: Beitlich, T]] |
Revision as of 08:03, 9 March 2022
Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex
|
Categories: Klep7 | Large Structures | Barends, T | Beitlich, T | Gomelsky, M | Griese, J | Hartmann, E | Kirienko, N | Reinstein, J | Ryjenkov, D | Schlichting, I | Shoeman, R | Bluf-domain | Eal-domain | Hydrolase | Signaling protein | Tim-barrel