3hap
From Proteopedia
(Difference between revisions)
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==Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles== | ==Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles== | ||
| - | <StructureSection load='3hap' size='340' side='right' caption='[[3hap]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='3hap' size='340' side='right'caption='[[3hap]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3hap]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_halobius_ruber"_klebahn_1919 "bacillus halobius ruber" klebahn 1919]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HAP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HAP FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CPS:3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE'>CPS</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=D12:DODECANE'>D12</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=R16:HEXADECANE'>R16</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3han|3han]], [[3hao|3hao]], [[3haq|3haq]], [[3har|3har]], [[3has|3has]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3han|3han]], [[3hao|3hao]], [[3haq|3haq]], [[3har|3har]], [[3has|3has]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bop, VNG_1467G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2242 "Bacillus halobius ruber" Klebahn 1919])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hap FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hap OCA], [https://pdbe.org/3hap PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hap RCSB], [https://www.ebi.ac.uk/pdbsum/3hap PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hap ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump. |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hap_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/3hap_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
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</div> | </div> | ||
<div class="pdbe-citations 3hap" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 3hap" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Bacillus halobius ruber klebahn 1919]] | [[Category: Bacillus halobius ruber klebahn 1919]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Bowie, J U]] | [[Category: Bowie, J U]] | ||
[[Category: Joh, N H]] | [[Category: Joh, N H]] | ||
Revision as of 11:57, 13 October 2021
Crystal structure of bacteriorhodopsin mutant L111A crystallized from bicelles
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Categories: Bacillus halobius ruber klebahn 1919 | Large Structures | Bowie, J U | Joh, N H | Yang, D | Bacteriorhodopsin | Cell membrane | Chromophore | Evolutionary constraint | Helical membrane protein | Hydrogen ion transport | Integral membrane protein | Ion transport | Membrane | Membrane protein | Packing force | Photoreceptor protein | Proton transport | Pyrrolidone carboxylic acid | Receptor | Retinal protein | Sensory transduction | Transmembrane | Transport | Transport protein | Van der waal
