This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3jwo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:05, 6 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility==
==Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility==
-
<StructureSection load='3jwo' size='340' side='right' caption='[[3jwo]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
+
<StructureSection load='3jwo' size='340' side='right'caption='[[3jwo]], [[Resolution|resolution]] 3.51&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3jwo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JWO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JWO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3jwo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JWO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JWO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.51&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3jwd|3jwd]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CD4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jwo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jwo OCA], [https://pdbe.org/3jwo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jwo RCSB], [https://www.ebi.ac.uk/pdbsum/3jwo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jwo ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jwo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jwo OCA], [http://pdbe.org/3jwo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jwo RCSB], [http://www.ebi.ac.uk/pdbsum/3jwo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jwo ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CD4_HUMAN CD4_HUMAN]] Accessory protein for MHC class-II antigen/T-cell receptor interaction. May regulate T-cell activation. Induces the aggregation of lipid rafts.
+
[https://www.uniprot.org/uniprot/CD4_HUMAN CD4_HUMAN] Accessory protein for MHC class-II antigen/T-cell receptor interaction. May regulate T-cell activation. Induces the aggregation of lipid rafts.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/3jwo_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/3jwo_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 31:
==See Also==
==See Also==
-
*[[CD4|CD4]]
+
*[[Antibody 3D structures|Antibody 3D structures]]
-
*[[3D structures of antibody|3D structures of antibody]]
+
*[[CD4 3D structures|CD4 3D structures]]
 +
*[[Gp120 3D structures|Gp120 3D structures]]
 +
*[[3D structures of human antibody|3D structures of human antibody]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Huang, C C]]
+
[[Category: Large Structures]]
-
[[Category: Kwon, Y D]]
+
[[Category: Huang CC]]
-
[[Category: Kwong, P D]]
+
[[Category: Kwon YD]]
-
[[Category: Majeed, S]]
+
[[Category: Kwong PD]]
-
[[Category: Pancera, M]]
+
[[Category: Majeed S]]
-
[[Category: Robinson, J E]]
+
[[Category: Pancera M]]
-
[[Category: Sodroski, J]]
+
[[Category: Robinson JE]]
-
[[Category: Wyatt, R]]
+
[[Category: Sodroski J]]
-
[[Category: Zhou, T]]
+
[[Category: Wyatt R]]
-
[[Category: Cell membrane]]
+
[[Category: Zhou T]]
-
[[Category: Disulfide bond]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Hiv-1 viral spike]]
+
-
[[Category: Host-virus interaction]]
+
-
[[Category: Immune response]]
+
-
[[Category: Molecular motion]]
+
-
[[Category: Protein architecture]]
+
-
[[Category: Receptor-triggered entry]]
+
-
[[Category: Type 1 fusion protein]]
+
-
[[Category: Viral protein]]
+

Current revision

Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility

PDB ID 3jwo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools