We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

5m3z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:24, 1 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine==
==Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine==
-
<StructureSection load='5m3z' size='340' side='right' caption='[[5m3z]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='5m3z' size='340' side='right'caption='[[5m3z]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m3z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_freundii"_braak_1928 "bacterium freundii" braak 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M3Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M3Z FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m3z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M3Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M3Z FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NLE:NORLEUCINE'>NLE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PY6:2-[O-PHOSPHONOPYRIDOXYL]-AMINO-HEXANOIC+ACID'>PY6</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=NLE:NORLEUCINE'>NLE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PY6:2-[O-PHOSPHONOPYRIDOXYL]-AMINO-HEXANOIC+ACID'>PY6</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AN672_11005, HMPREF3212_02785, TN42_08855, TO64_18625 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=546 "Bacterium freundii" Braak 1928])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m3z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m3z OCA], [https://pdbe.org/5m3z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m3z RCSB], [https://www.ebi.ac.uk/pdbsum/5m3z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m3z ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_gamma-lyase Methionine gamma-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.4.1.11 4.4.1.11] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m3z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m3z OCA], [http://pdbe.org/5m3z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m3z RCSB], [http://www.ebi.ac.uk/pdbsum/5m3z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m3z ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0A5P8W7_CITFR A0A0A5P8W7_CITFR]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5m3z" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5m3z" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Methionine gamma-lyase 3D structures|Methionine gamma-lyase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacterium freundii braak 1928]]
+
[[Category: Citrobacter freundii]]
-
[[Category: Methionine gamma-lyase]]
+
[[Category: Large Structures]]
-
[[Category: Anufrieva, N V]]
+
[[Category: Anufrieva NV]]
-
[[Category: Demidkina, T V]]
+
[[Category: Demidkina TV]]
-
[[Category: Morozova, E A]]
+
[[Category: Morozova EA]]
-
[[Category: Nikulin, A D]]
+
[[Category: Nikulin AD]]
-
[[Category: Revtovich, S V]]
+
[[Category: Revtovich SV]]
-
[[Category: C115h substitution]]
+
-
[[Category: L-norleucine]]
+
-
[[Category: Lyase]]
+

Current revision

Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine

PDB ID 5m3z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5m3z"
Personal tools