This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5m3z

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:24, 1 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine==
==Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine==
-
<StructureSection load='5m3z' size='340' side='right' caption='[[5m3z]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='5m3z' size='340' side='right'caption='[[5m3z]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5m3z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_freundii"_braak_1928 "bacterium freundii" braak 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M3Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M3Z FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5m3z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M3Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M3Z FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NLE:NORLEUCINE'>NLE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PY6:2-[O-PHOSPHONOPYRIDOXYL]-AMINO-HEXANOIC+ACID'>PY6</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=NLE:NORLEUCINE'>NLE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=PLP:PYRIDOXAL-5-PHOSPHATE'>PLP</scene>, <scene name='pdbligand=PY6:2-[O-PHOSPHONOPYRIDOXYL]-AMINO-HEXANOIC+ACID'>PY6</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AN672_11005, HMPREF3212_02785, TN42_08855, TO64_18625 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=546 "Bacterium freundii" Braak 1928])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m3z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m3z OCA], [https://pdbe.org/5m3z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m3z RCSB], [https://www.ebi.ac.uk/pdbsum/5m3z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m3z ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_gamma-lyase Methionine gamma-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.4.1.11 4.4.1.11] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m3z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m3z OCA], [http://pdbe.org/5m3z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m3z RCSB], [http://www.ebi.ac.uk/pdbsum/5m3z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m3z ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0A5P8W7_CITFR A0A0A5P8W7_CITFR]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5m3z" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5m3z" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Methionine gamma-lyase 3D structures|Methionine gamma-lyase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacterium freundii braak 1928]]
+
[[Category: Citrobacter freundii]]
-
[[Category: Methionine gamma-lyase]]
+
[[Category: Large Structures]]
-
[[Category: Anufrieva, N V]]
+
[[Category: Anufrieva NV]]
-
[[Category: Demidkina, T V]]
+
[[Category: Demidkina TV]]
-
[[Category: Morozova, E A]]
+
[[Category: Morozova EA]]
-
[[Category: Nikulin, A D]]
+
[[Category: Nikulin AD]]
-
[[Category: Revtovich, S V]]
+
[[Category: Revtovich SV]]
-
[[Category: C115h substitution]]
+
-
[[Category: L-norleucine]]
+
-
[[Category: Lyase]]
+

Current revision

Crystal structure of Citrobacter freundii methionine gamma-lyase with C115H replacement in the complex with L-norleucine

PDB ID 5m3z

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5m3z"
Personal tools