This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5jqj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:02, 20 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Directed evolutionary changes in MBL super family - NDM-1 Round 10 crystal-1==
==Directed evolutionary changes in MBL super family - NDM-1 Round 10 crystal-1==
-
<StructureSection load='5jqj' size='340' side='right' caption='[[5jqj]], [[Resolution|resolution]] 1.67&Aring;' scene=''>
+
<StructureSection load='5jqj' size='340' side='right'caption='[[5jqj]], [[Resolution|resolution]] 1.67&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5jqj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus pneumoniae" (schroeter 1886) flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JQJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JQJ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5jqj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JQJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JQJ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.67&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blaNDM-1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=573 "Bacillus pneumoniae" (Schroeter 1886) Flugge 1886])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jqj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jqj OCA], [https://pdbe.org/5jqj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jqj RCSB], [https://www.ebi.ac.uk/pdbsum/5jqj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jqj ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jqj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jqj OCA], [http://pdbe.org/5jqj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jqj RCSB], [http://www.ebi.ac.uk/pdbsum/5jqj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jqj ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BLAN1_KLEPN BLAN1_KLEPN]] Confers resistance to many beta-lactam antibiotics, including some carbapenems. Does not confer resistance to the polymixin colistin or the fluoroquinolone ciprofloxacin.
+
[https://www.uniprot.org/uniprot/BLAN1_KLEPN BLAN1_KLEPN] Confers resistance to many beta-lactam antibiotics, including some carbapenems. Does not confer resistance to the polymixin colistin or the fluoroquinolone ciprofloxacin.
 +
 
 +
==See Also==
 +
*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-lactamase]]
+
[[Category: Klebsiella pneumoniae]]
-
[[Category: Carr, P D]]
+
[[Category: Large Structures]]
-
[[Category: Hong, N S]]
+
[[Category: Carr PD]]
-
[[Category: Jackson, C J]]
+
[[Category: Hong N-S]]
-
[[Category: Directed evolution]]
+
[[Category: Jackson CJ]]
-
[[Category: Hydrolase]]
+
-
[[Category: Mbl super family]]
+
-
[[Category: Ndm-1]]
+
-
[[Category: Phosphatase]]
+

Current revision

Directed evolutionary changes in MBL super family - NDM-1 Round 10 crystal-1

PDB ID 5jqj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools