This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5syj
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of the D141A variant of B. pseudomallei KatGin complex with isoniazid== | ==Crystal structure of the D141A variant of B. pseudomallei KatGin complex with isoniazid== | ||
| - | <StructureSection load='5syj' size='340' side='right' caption='[[5syj]], [[Resolution|resolution]] 1.88Å' scene=''> | + | <StructureSection load='5syj' size='340' side='right'caption='[[5syj]], [[Resolution|resolution]] 1.88Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5syj]] is a 2 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4kwq 4kwq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SYJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5SYJ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5syj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burp1 Burp1]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4kwq 4kwq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5SYJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5SYJ FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NIZ:PYRIDINE-4-CARBOHYDRAZIDE'>NIZ</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NIZ:PYRIDINE-4-CARBOHYDRAZIDE'>NIZ</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">katG, BURPS1710b_3366 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=320372 BURP1])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase_peroxidase Catalase peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.21 1.11.1.21] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase_peroxidase Catalase peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.21 1.11.1.21] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5syj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5syj OCA], [http://pdbe.org/5syj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5syj RCSB], [http://www.ebi.ac.uk/pdbsum/5syj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5syj ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5syj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5syj OCA], [http://pdbe.org/5syj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5syj RCSB], [http://www.ebi.ac.uk/pdbsum/5syj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5syj ProSAT]</span></td></tr> | ||
| Line 19: | Line 20: | ||
</div> | </div> | ||
<div class="pdbe-citations 5syj" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5syj" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Catalase 3D structures|Catalase 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Burp1]] | ||
[[Category: Catalase peroxidase]] | [[Category: Catalase peroxidase]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Loewen, P C]] | [[Category: Loewen, P C]] | ||
[[Category: Catalase-peroxidase]] | [[Category: Catalase-peroxidase]] | ||
Revision as of 08:14, 8 January 2020
Crystal structure of the D141A variant of B. pseudomallei KatGin complex with isoniazid
| |||||||||||
