This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ntb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:33, 28 December 2023) (edit) (undo)
 
Line 1: Line 1:
==Structure of 6-methylthio naproxen analog bound to mCOX-2.==
==Structure of 6-methylthio naproxen analog bound to mCOX-2.==
-
<StructureSection load='3ntb' size='340' side='right' caption='[[3ntb]], [[Resolution|resolution]] 2.27&Aring;' scene=''>
+
<StructureSection load='3ntb' size='340' side='right'caption='[[3ntb]], [[Resolution|resolution]] 2.27&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ntb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NTB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ntb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NTB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=T1N:(2S)-2-[6-(METHYLSULFANYL)NAPHTHALEN-2-YL]PROPANOIC+ACID'>T1N</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.27&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3pgh|3pgh]], [[1pxx|1pxx]], [[1cqe|1cqe]], [[3nt1|3nt1]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900017:triacetyl-beta-chitotriose'>PRD_900017</scene>, <scene name='pdbligand=T1N:(2S)-2-[6-(METHYLSULFANYL)NAPHTHALEN-2-YL]PROPANOIC+ACID'>T1N</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">COX-2 PGHS-B, mCG_5001, Ptgs2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ntb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ntb OCA], [https://pdbe.org/3ntb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ntb RCSB], [https://www.ebi.ac.uk/pdbsum/3ntb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ntb ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Prostaglandin-endoperoxide_synthase Prostaglandin-endoperoxide synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.99.1 1.14.99.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ntb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ntb OCA], [http://pdbe.org/3ntb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ntb RCSB], [http://www.ebi.ac.uk/pdbsum/3ntb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ntb ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PGH2_MOUSE PGH2_MOUSE]] Mediates the formation of prostaglandins from arachidonate. May have a role as a major mediator of inflammation and/or a role for prostanoid signaling in activity-dependent plasticity.<ref>PMID:12925531</ref> <ref>PMID:20463020</ref> <ref>PMID:20810665</ref> <ref>PMID:21489986</ref>
+
[https://www.uniprot.org/uniprot/PGH2_MOUSE PGH2_MOUSE] Mediates the formation of prostaglandins from arachidonate. May have a role as a major mediator of inflammation and/or a role for prostanoid signaling in activity-dependent plasticity.<ref>PMID:12925531</ref> <ref>PMID:20463020</ref> <ref>PMID:20810665</ref> <ref>PMID:21489986</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nt/3ntb_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nt/3ntb_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 29:
</div>
</div>
<div class="pdbe-citations 3ntb" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3ntb" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Cyclooxygenase 3D structures|Cyclooxygenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Prostaglandin-endoperoxide synthase]]
+
[[Category: Mus musculus]]
-
[[Category: Duggan, K C]]
+
[[Category: Duggan KC]]
-
[[Category: Harp, J M]]
+
[[Category: Harp JM]]
-
[[Category: Kiefer, J R]]
+
[[Category: Kiefer JR]]
-
[[Category: Marnett, L J]]
+
[[Category: Marnett LJ]]
-
[[Category: Musee, J]]
+
[[Category: Musee J]]
-
[[Category: Oates, J A]]
+
[[Category: Oates JA]]
-
[[Category: Walters, M J]]
+
[[Category: Walters MJ]]
-
[[Category: Cyclooxygeanse-2]]
+
-
[[Category: Naproxen analog]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Prostaglandin h2 synthase]]
+

Current revision

Structure of 6-methylthio naproxen analog bound to mCOX-2.

PDB ID 3ntb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools