This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3pk6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Urate oxidase under 0.2 MPa / 2 bars pressure of xenon==
==Urate oxidase under 0.2 MPa / 2 bars pressure of xenon==
-
<StructureSection load='3pk6' size='340' side='right' caption='[[3pk6]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3pk6' size='340' side='right'caption='[[3pk6]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3pk6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspfl Aspfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PK6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PK6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3pk6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspfl Aspfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PK6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PK6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZA:8-AZAXANTHINE'>AZA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3pjk|3pjk]], [[3pk3|3pk3]], [[3pk4|3pk4]], [[3pk5|3pk5]], [[3pk8|3pk8]], [[3pkf|3pkf]], [[3pkg|3pkg]], [[3pkh|3pkh]], [[3pkk|3pkk]], [[3pkl|3pkl]], [[3pks|3pks]], [[3pkt|3pkt]], [[3pku|3pku]], [[3ple|3ple]], [[3plg|3plg]], [[3plh|3plh]], [[3pli|3pli]], [[3plj|3plj]], [[3plm|3plm]], [[2ic0|2ic0]], [[2icq|2icq]], [[2iba|2iba]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3pjk|3pjk]], [[3pk3|3pk3]], [[3pk4|3pk4]], [[3pk5|3pk5]], [[3pk8|3pk8]], [[3pkf|3pkf]], [[3pkg|3pkg]], [[3pkh|3pkh]], [[3pkk|3pkk]], [[3pkl|3pkl]], [[3pks|3pks]], [[3pkt|3pkt]], [[3pku|3pku]], [[3ple|3ple]], [[3plg|3plg]], [[3plh|3plh]], [[3pli|3pli]], [[3plj|3plj]], [[3plm|3plm]], [[2ic0|2ic0]], [[2icq|2icq]], [[2iba|2iba]]</div></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">uaZ, uox ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5059 ASPFL])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">uaZ, uox ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5059 ASPFL])</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Factor_independent_urate_hydroxylase Factor independent urate hydroxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.3 1.7.3.3] </span></td></tr>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Factor_independent_urate_hydroxylase Factor independent urate hydroxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.3.3 1.7.3.3] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pk6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pk6 OCA], [http://pdbe.org/3pk6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3pk6 RCSB], [http://www.ebi.ac.uk/pdbsum/3pk6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3pk6 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pk6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pk6 OCA], [https://pdbe.org/3pk6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pk6 RCSB], [https://www.ebi.ac.uk/pdbsum/3pk6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pk6 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL]] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
+
[[https://www.uniprot.org/uniprot/URIC_ASPFL URIC_ASPFL]] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 22:
</div>
</div>
<div class="pdbe-citations 3pk6" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3pk6" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Urate Oxidase|Urate Oxidase]]
== References ==
== References ==
<references/>
<references/>
Line 28: Line 31:
[[Category: Aspfl]]
[[Category: Aspfl]]
[[Category: Factor independent urate hydroxylase]]
[[Category: Factor independent urate hydroxylase]]
 +
[[Category: Large Structures]]
[[Category: Abraini, J H]]
[[Category: Abraini, J H]]
[[Category: Marassio, G]]
[[Category: Marassio, G]]

Revision as of 08:42, 25 May 2022

Urate oxidase under 0.2 MPa / 2 bars pressure of xenon

PDB ID 3pk6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools