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3svd
From Proteopedia
(Difference between revisions)
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==Engineered medium-affinity halide-binding protein derived from YFP: bromide complex== | ==Engineered medium-affinity halide-binding protein derived from YFP: bromide complex== | ||
| - | <StructureSection load='3svd' size='340' side='right' caption='[[3svd]], [[Resolution|resolution]] 1.78Å' scene=''> | + | <StructureSection load='3svd' size='340' side='right'caption='[[3svd]], [[Resolution|resolution]] 1.78Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3svd]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3svd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SVD FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr> | ||
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3sry|3sry]], [[3ss0|3ss0]], [[3ssh|3ssh]], [[3ssk|3ssk]], [[3ssl|3ssl]], [[3ssp|3ssp]], [[3sst|3sst]], [[3ssv|3ssv]], [[3ssy|3ssy]], [[3sve|3sve]], [[3st0|3st0]], [[3sv5|3sv5]], [[3svb|3svb]], [[3svc|3svc]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3sry|3sry]], [[3ss0|3ss0]], [[3ssh|3ssh]], [[3ssk|3ssk]], [[3ssl|3ssl]], [[3ssp|3ssp]], [[3sst|3sst]], [[3ssv|3ssv]], [[3ssy|3ssy]], [[3sve|3sve]], [[3st0|3st0]], [[3sv5|3sv5]], [[3svb|3svb]], [[3svc|3svc]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3svd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3svd OCA], [https://pdbe.org/3svd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3svd RCSB], [https://www.ebi.ac.uk/pdbsum/3svd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3svd ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin. |
| + | |||
| + | ==See Also== | ||
| + | *[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Aeqvi]] | [[Category: Aeqvi]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Beese, L S]] | [[Category: Beese, L S]] | ||
[[Category: Grimley, J S]] | [[Category: Grimley, J S]] | ||
Revision as of 08:12, 29 June 2022
Engineered medium-affinity halide-binding protein derived from YFP: bromide complex
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