This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4glw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==DNA ligase A in complex with inhibitor==
==DNA ligase A in complex with inhibitor==
-
<StructureSection load='4glw' size='340' side='right' caption='[[4glw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='4glw' size='340' side='right'caption='[[4glw]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4glw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Strzp Strzp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GLW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GLW FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4glw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_P1031 Streptococcus pneumoniae P1031]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GLW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GLW FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0XT:7-METHOXY-6-METHYLPTERIDINE-2,4-DIAMINE'>0XT</scene>, <scene name='pdbligand=NMN:BETA-NICOTINAMIDE+RIBOSE+MONOPHOSPHATE'>NMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0XT:7-METHOXY-6-METHYLPTERIDINE-2,4-DIAMINE'>0XT</scene>, <scene name='pdbligand=NMN:BETA-NICOTINAMIDE+RIBOSE+MONOPHOSPHATE'>NMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3baa|3baa]], [[4glx|4glx]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4glw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4glw OCA], [https://pdbe.org/4glw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4glw RCSB], [https://www.ebi.ac.uk/pdbsum/4glw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4glw ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ligA, SPP_1122 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=488223 STRZP])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_ligase_(NAD(+)) DNA ligase (NAD(+))], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.5.1.2 6.5.1.2] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4glw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4glw OCA], [http://pdbe.org/4glw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4glw RCSB], [http://www.ebi.ac.uk/pdbsum/4glw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4glw ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DNLJ_STRZP DNLJ_STRZP]] DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.[HAMAP-Rule:MF_01588]
+
[https://www.uniprot.org/uniprot/DNLJ_STRZP DNLJ_STRZP] DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.[HAMAP-Rule:MF_01588]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 18:
</div>
</div>
<div class="pdbe-citations 4glw" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4glw" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[DNA ligase 3D structures|DNA ligase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Strzp]]
+
[[Category: Large Structures]]
-
[[Category: Chambovey, A]]
+
[[Category: Streptococcus pneumoniae P1031]]
-
[[Category: Lange, R]]
+
[[Category: Chambovey A]]
-
[[Category: Prade, L]]
+
[[Category: Lange R]]
-
[[Category: Tidten-Luksch, N]]
+
[[Category: Prade L]]
-
[[Category: Dna ligase some]]
+
[[Category: Tidten-Luksch N]]
-
[[Category: Inhibitor]]
+
-
[[Category: Ligase-ligase inhibitor complex]]
+

Revision as of 07:04, 26 October 2022

DNA ligase A in complex with inhibitor

PDB ID 4glw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools