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4h8i

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Revision as of 08:04, 3 November 2022

Structure of GluK2-LBD in complex with GluAzo

Structural highlights

4h8i is a 2 chain structure with sequence from Rattus norvegicus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	, , ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

GRIK2_RAT Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus. Modulates cell surface expression of NETO2 (By similarity).^[1] ^[2]

Publication Abstract from PubMed

Incorporation of the azobenzene derivative gluazo, a synthetic photochromic ligand, into a kainate receptor allows for the optical control of neuronal activity. The crystal structure of gluazo bound to a dimeric GluK2 ligand-binding domain reveals one monomer in a closed conformation, occupied by gluazo, and the other in an open conformation, with a bound buffer molecule. The glutamate group of gluazo interacts like the natural glutamate ligand, while its trans-azobenzene moiety protrudes into a tunnel. This elongated cavity presumably cannot accommodate a cis-azobenzene, which explains the reversible activation of the receptor upon photoisomerization.

A photoswitchable neurotransmitter analogue bound to its receptor.,Reiter A, Skerra A, Trauner D, Schiefner A Biochemistry. 2013 Dec 17;52(50):8972-4. doi: 10.1021/bi4014402. Epub 2013 Dec 6. PMID:24295282^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Martin S, Nishimune A, Mellor JR, Henley JM. SUMOylation regulates kainate-receptor-mediated synaptic transmission. Nature. 2007 May 17;447(7142):321-5. Epub 2007 May 7. PMID:17486098 doi:nature05736
↑ Weston MC, Schuck P, Ghosal A, Rosenmund C, Mayer ML. Conformational restriction blocks glutamate receptor desensitization. Nat Struct Mol Biol. 2006 Dec;13(12):1120-7. Epub 2006 Nov 19. PMID:17115050 doi:http://dx.doi.org/10.1038/nsmb1178
↑ Reiter A, Skerra A, Trauner D, Schiefner A. A photoswitchable neurotransmitter analogue bound to its receptor. Biochemistry. 2013 Dec 17;52(50):8972-4. doi: 10.1021/bi4014402. Epub 2013 Dec 6. PMID:24295282 doi:http://dx.doi.org/10.1021/bi4014402

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4h8i"

@@ Line 1: / Line 1: @@
 ==Structure of GluK2-LBD in complex with GluAzo==
-<StructureSection load='4h8i' size='340' side='right' caption='[[4h8i]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+<StructureSection load='4h8i' size='340' side='right'caption='[[4h8i]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4h8i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H8I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H8I FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4h8i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H8I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H8I FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=11W:(4R)-4-[(2E)-3-{4-[(E)-PHENYLDIAZENYL]PHENYL}PROP-2-EN-1-YL]-L-GLUTAMIC+ACID'>11W</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=11W:(4R)-4-[(2E)-3-{4-[(E)-PHENYLDIAZENYL]PHENYL}PROP-2-EN-1-YL]-L-GLUTAMIC+ACID'>11W</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4h8j|4h8j]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h8i OCA], [https://pdbe.org/4h8i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h8i RCSB], [https://www.ebi.ac.uk/pdbsum/4h8i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h8i ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Glur6, Grik2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h8i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h8i OCA], [http://pdbe.org/4h8i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4h8i RCSB], [http://www.ebi.ac.uk/pdbsum/4h8i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4h8i ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/GRIK2_RAT GRIK2_RAT]] Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus. Modulates cell surface expression of NETO2 (By similarity).<ref>PMID:17486098</ref> <ref>PMID:17115050</ref>
+[https://www.uniprot.org/uniprot/GRIK2_RAT GRIK2_RAT] Ionotropic glutamate receptor. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. May be involved in the transmission of light information from the retina to the hypothalamus. Modulates cell surface expression of NETO2 (By similarity).<ref>PMID:17486098</ref> <ref>PMID:17115050</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 20: / Line 18: @@
 </div>
 <div class="pdbe-citations 4h8i" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Glutamate receptor 3D structures|Glutamate receptor 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Buffalo rat]]
+[[Category: Large Structures]]
-[[Category: Reiter, A]]
+[[Category: Rattus norvegicus]]
-[[Category: Schiefner, A]]
+[[Category: Reiter A]]
-[[Category: Skerra, A]]
+[[Category: Schiefner A]]
-[[Category: Trauner, D]]
+[[Category: Skerra A]]
-[[Category: Gluazo]]
+[[Category: Trauner D]]
-[[Category: Glycoprotein]]
-[[Category: Ion channel]]
-[[Category: Ion transport]]
-[[Category: Ionotropic glutamate receptor]]
-[[Category: Kainate receptor]]
-[[Category: Ligand-binding domain]]
-[[Category: Membrane protein]]
-[[Category: Me]]
-[[Category: Pcl]]
-[[Category: Photochromic ligand]]
-[[Category: Postsynaptic cell membrane]]
-[[Category: Presynaptic cell membrane]]
-[[Category: Signaling protein]]
-[[Category: Synapse]]
-[[Category: Transmembrane protein]]

4h8i

From Proteopedia

Revision as of 08:04, 3 November 2022

Structure of GluK2-LBD in complex with GluAzo

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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