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4v4u
From Proteopedia
(Difference between revisions)
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==The quasi-atomic model of Human Adenovirus type 5 capsid== | ==The quasi-atomic model of Human Adenovirus type 5 capsid== | ||
| - | <StructureSection load='4v4u' size='340' side='right' caption='[[4v4u]], [[Resolution|resolution]] 10.00Å' scene=''> | + | <StructureSection load='4v4u' size='340' side='right'caption='[[4v4u]], [[Resolution|resolution]] 10.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4v4u]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Ade02 Ade02] and [http://en.wikipedia.org/wiki/Ade05 Ade05]. This structure supersedes | + | <table><tr><td colspan='2'>[[4v4u]] is a 22 chain structure with sequence from [http://en.wikipedia.org/wiki/Ade02 Ade02] and [http://en.wikipedia.org/wiki/Ade05 Ade05]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2bld 2bld] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2bvi 2bvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V4U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V4U FirstGlance]. <br> |
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1x9p|1x9p]], [[1x9t|1x9t]]</td></tr> | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1x9p|1x9p]], [[1x9t|1x9t]]</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v4u OCA], [http://pdbe.org/4v4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v4u RCSB], [http://www.ebi.ac.uk/pdbsum/4v4u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v4u ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v4u OCA], [http://pdbe.org/4v4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4v4u RCSB], [http://www.ebi.ac.uk/pdbsum/4v4u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4v4u ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| - | {{Large structure}} | ||
== Function == | == Function == | ||
[[http://www.uniprot.org/uniprot/CAPSP_ADE02 CAPSP_ADE02]] Major capsid protein that self-associates to form penton base pentamers, each in the shape of a pentagon, situated at the 12 vertices of the pseudo T=25 capsid. Involved in virus secondary attachment to host cell after initial attachment by the fiber protein. Binds host integrin heterodimer ITGAV-ITGB5 (alphaV-beta5) thereby triggering clathrin-mediated endocytosis of virions. Mediates initial virus attachment to CXADR-negative cells. Binding to integrins ITGAV-ITGB5 also seems to induce macropinocytosis uptake of the virus. As the virus enters the host cell, penton proteins are shed concomitant with virion acidification in the endosome.<ref>PMID:12221069</ref> <ref>PMID:20615244</ref> <ref>PMID:20798312</ref> [[http://www.uniprot.org/uniprot/CAPSH_ADE05 CAPSH_ADE05]] Major capsid protein that self-associates to form 240 hexon trimers, each in the shape of a hexagon, building most of the pseudo T=25 capsid. Assembled into trimeric units with the help of the chaperone shutoff protein (By similarity). Transported by pre-protein VI to the nucleus where it associates with other structural proteins to form an empty capsid. Might be involved, through its interaction with host dyneins, in the intracellular microtubule-dependent transport of incoming viral capsid to the nucleus. | [[http://www.uniprot.org/uniprot/CAPSP_ADE02 CAPSP_ADE02]] Major capsid protein that self-associates to form penton base pentamers, each in the shape of a pentagon, situated at the 12 vertices of the pseudo T=25 capsid. Involved in virus secondary attachment to host cell after initial attachment by the fiber protein. Binds host integrin heterodimer ITGAV-ITGB5 (alphaV-beta5) thereby triggering clathrin-mediated endocytosis of virions. Mediates initial virus attachment to CXADR-negative cells. Binding to integrins ITGAV-ITGB5 also seems to induce macropinocytosis uptake of the virus. As the virus enters the host cell, penton proteins are shed concomitant with virion acidification in the endosome.<ref>PMID:12221069</ref> <ref>PMID:20615244</ref> <ref>PMID:20798312</ref> [[http://www.uniprot.org/uniprot/CAPSH_ADE05 CAPSH_ADE05]] Major capsid protein that self-associates to form 240 hexon trimers, each in the shape of a hexagon, building most of the pseudo T=25 capsid. Assembled into trimeric units with the help of the chaperone shutoff protein (By similarity). Transported by pre-protein VI to the nucleus where it associates with other structural proteins to form an empty capsid. Might be involved, through its interaction with host dyneins, in the intracellular microtubule-dependent transport of incoming viral capsid to the nucleus. | ||
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[[Category: Ade02]] | [[Category: Ade02]] | ||
[[Category: Ade05]] | [[Category: Ade05]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Conway, J F]] | [[Category: Conway, J F]] | ||
[[Category: Cusack, S]] | [[Category: Cusack, S]] | ||
Revision as of 07:26, 23 October 2019
The quasi-atomic model of Human Adenovirus type 5 capsid
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