2b1g

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[[Image:2b1g.gif|left|200px]]
[[Image:2b1g.gif|left|200px]]
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{{Structure
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|PDB= 2b1g |SIZE=350|CAPTION= <scene name='initialview01'>2b1g</scene>, resolution 2.100&Aring;
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The line below this paragraph, containing "STRUCTURE_2b1g", creates the "Structure Box" on the page.
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|LIGAND= <scene name='pdbligand=13A:7-(3,4-DIHYDROXY-5R-HYDROXYMETHYLTETRAHYDROFURAN-2-YL)-2,2-DIOXO-1,2R,3R,7-TETRAHYDRO-2L6-IMIDAZO[4,5-C][1,2,6]THIADIAZIN-4S-ONE'>13A</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
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|GENE= ATIC, PURH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 Gallus gallus])
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{{STRUCTURE_2b1g| PDB=2b1g | SCENE= }}
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|RELATEDENTRY=[[1g8m|1G8M]], [[1m9n|1M9N]], [[1oz0|1OZ0]], [[1pl0|1PL0]], [[1thz|1THZ]], [[1pkx|1PKX]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b1g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b1g OCA], [http://www.ebi.ac.uk/pdbsum/2b1g PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2b1g RCSB]</span>
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'''Crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase'''
'''Crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase'''
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[[Category: Wilson, I A.]]
[[Category: Wilson, I A.]]
[[Category: Xu, L.]]
[[Category: Xu, L.]]
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[[Category: atic]]
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[[Category: Atic]]
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[[Category: impch]]
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[[Category: Impch]]
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[[Category: inhibitor]]
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[[Category: Inhibitor]]
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[[Category: structure-base]]
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[[Category: Structure-base]]
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[[Category: transition state analogue]]
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[[Category: Transition state analogue]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 19:44:02 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:00:08 2008''
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Revision as of 16:44, 3 May 2008

Image:2b1g.gif

Template:STRUCTURE 2b1g

Crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase


Overview

The inosine monophosphate cyclohydrolase (IMPCH) component (residues 1-199) of the bifunctional enzyme aminoimidazole-4-carboxamide ribonucleotide transformylase (AICAR Tfase, residues 200-593)/IMPCH (ATIC) catalyzes the final step in the de novo purine biosynthesis pathway that produces IMP. As a potential target for antineoplastic intervention, we designed IMPCH inhibitors, 1,5-dihydroimidazo[4,5-c][1,2,6]thiadiazin-4(3H)-one 2,2-dioxide (heterocycle, 1), the corresponding nucleoside (2), and the nucleoside monophosphate (nucleotide) (3), as mimics of the tetrahedral intermediate in the cyclization reaction. All compounds are competitive inhibitors against IMPCH (K(i) values = 0.13-0.23 microm) with the simple heterocycle 1 exhibiting the most potent inhibition (K(i) = 0.13 microm). Crystal structures of bifunctional ATIC in complex with nucleoside 2 and nucleotide 3 revealed IMPCH binding modes similar to that of the IMPCH feedback inhibitor, xanthosine 5'-monophosphate. Surprisingly, the simpler heterocycle 1 had a completely different IMPCH binding mode and was relocated to the phosphate binding pocket that was identified from previous xanthosine 5'-monophosphate structures. The aromatic imidazole ring interacts with a helix dipole, similar to the interaction with the phosphate moiety of 3. The crystal structures not only revealed the mechanism of inhibition of these compounds, but they now serve as a platform for future inhibitor improvements. Importantly, the nucleoside-complexed structure supports the notion that inhibitors lacking a negatively charged phosphate can still inhibit IMPCH activity with comparable potency to phosphate-containing inhibitors. Provocatively, the nucleotide inhibitor 3 also binds to the AICAR Tfase domain of ATIC, which now provides a lead compound for the design of inhibitors that simultaneously target both active sites of this bifunctional enzyme.

About this Structure

2B1G is a Single protein structure of sequence from Gallus gallus. Full crystallographic information is available from OCA.

Reference

Structure-based design, synthesis, evaluation, and crystal structures of transition state analogue inhibitors of inosine monophosphate cyclohydrolase., Xu L, Chong Y, Hwang I, D'Onofrio A, Amore K, Beardsley GP, Li C, Olson AJ, Boger DL, Wilson IA, J Biol Chem. 2007 Apr 27;282(17):13033-46. Epub 2007 Feb 26. PMID:17324932 Page seeded by OCA on Sat May 3 19:44:02 2008

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