5mg0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:42, 1 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography==
==Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography==
-
<StructureSection load='5mg0' size='340' side='right' caption='[[5mg0]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='5mg0' size='340' side='right'caption='[[5mg0]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5mg0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Deira Deira]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5MG0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5mg0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MG0 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2o9c|2o9c]], [[4y3i|4y3i]], [[4y5f|4y5f]], [[4q0h|4q0h]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bphP, DR_A0050 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243230 DEIRA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mg0 OCA], [https://pdbe.org/5mg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mg0 RCSB], [https://www.ebi.ac.uk/pdbsum/5mg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mg0 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5mg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mg0 OCA], [http://pdbe.org/5mg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5mg0 RCSB], [http://www.ebi.ac.uk/pdbsum/5mg0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5mg0 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA]] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light.
+
[https://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Deira]]
+
[[Category: Deinococcus radiodurans R1]]
-
[[Category: Histidine kinase]]
+
[[Category: Large Structures]]
-
[[Category: Aller, P]]
+
[[Category: Aller P]]
-
[[Category: Alonso-Mori, R]]
+
[[Category: Alonso-Mori R]]
-
[[Category: Braeuer, P]]
+
[[Category: Braeuer P]]
-
[[Category: Brewster, A S]]
+
[[Category: Brewster AS]]
-
[[Category: Burgie, E S]]
+
[[Category: Burgie ES]]
-
[[Category: Clinger, J]]
+
[[Category: Clinger J]]
-
[[Category: Fuller, F D]]
+
[[Category: Fuller FD]]
-
[[Category: Gul, S]]
+
[[Category: Gul S]]
-
[[Category: Hutchison, C]]
+
[[Category: Hutchison C]]
-
[[Category: Kern, J]]
+
[[Category: Kern J]]
-
[[Category: Miller, M D]]
+
[[Category: Miller MD]]
-
[[Category: Orville, A M]]
+
[[Category: Orville AM]]
-
[[Category: Phillips, G N]]
+
[[Category: Phillips Jr GN]]
-
[[Category: Sauter, N K]]
+
[[Category: Sauter NK]]
-
[[Category: Vierstra, R D]]
+
[[Category: Vierstra RD]]
-
[[Category: Yachandra, V K]]
+
[[Category: Yachandra VK]]
-
[[Category: Yano, J]]
+
[[Category: Yano J]]
-
[[Category: Young, I D]]
+
[[Category: Young ID]]
-
[[Category: Bilin]]
+
-
[[Category: Photoreceptor]]
+
-
[[Category: Phytochrome]]
+
-
[[Category: Sfx]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography

PDB ID 5mg0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools