5mg0
From Proteopedia
(Difference between revisions)
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==Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography== | ==Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography== | ||
- | <StructureSection load='5mg0' size='340' side='right' caption='[[5mg0]], [[Resolution|resolution]] 1.65Å' scene=''> | + | <StructureSection load='5mg0' size='340' side='right'caption='[[5mg0]], [[Resolution|resolution]] 1.65Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5mg0]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5mg0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans_R1 Deinococcus radiodurans R1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5MG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5MG0 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LBV:3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC+ACID'>LBV</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5mg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5mg0 OCA], [https://pdbe.org/5mg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5mg0 RCSB], [https://www.ebi.ac.uk/pdbsum/5mg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5mg0 ProSAT]</span></td></tr> | |
- | + | ||
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/BPHY_DEIRA BPHY_DEIRA] Photoreceptor which exists in two forms that are reversibly interconvertible by light: the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift for the far-red maximum. Could also absorb green light. May participate in regulating pigment synthesis like the carotenoid deinoxanthin which could protect the bacterium from intense visible light. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Deinococcus radiodurans R1]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Aller | + | [[Category: Aller P]] |
- | [[Category: Alonso-Mori | + | [[Category: Alonso-Mori R]] |
- | [[Category: Braeuer | + | [[Category: Braeuer P]] |
- | [[Category: Brewster | + | [[Category: Brewster AS]] |
- | [[Category: Burgie | + | [[Category: Burgie ES]] |
- | [[Category: Clinger | + | [[Category: Clinger J]] |
- | [[Category: Fuller | + | [[Category: Fuller FD]] |
- | [[Category: Gul | + | [[Category: Gul S]] |
- | [[Category: Hutchison | + | [[Category: Hutchison C]] |
- | [[Category: Kern | + | [[Category: Kern J]] |
- | [[Category: Miller | + | [[Category: Miller MD]] |
- | [[Category: Orville | + | [[Category: Orville AM]] |
- | [[Category: Phillips | + | [[Category: Phillips Jr GN]] |
- | [[Category: Sauter | + | [[Category: Sauter NK]] |
- | [[Category: Vierstra | + | [[Category: Vierstra RD]] |
- | [[Category: Yachandra | + | [[Category: Yachandra VK]] |
- | [[Category: Yano | + | [[Category: Yano J]] |
- | [[Category: Young | + | [[Category: Young ID]] |
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Current revision
Structure of PAS-GAF fragment of Deinococcus phytochrome by serial femtosecond crystallography
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Categories: Deinococcus radiodurans R1 | Large Structures | Aller P | Alonso-Mori R | Braeuer P | Brewster AS | Burgie ES | Clinger J | Fuller FD | Gul S | Hutchison C | Kern J | Miller MD | Orville AM | Phillips Jr GN | Sauter NK | Vierstra RD | Yachandra VK | Yano J | Young ID