5yua
From Proteopedia
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<StructureSection load='5yua' size='340' side='right' caption='[[5yua]], [[Resolution|resolution]] 2.80Å' scene=''> | <StructureSection load='5yua' size='340' side='right' caption='[[5yua]], [[Resolution|resolution]] 2.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5yua]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YUA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YUA FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5yua]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_49616 Atcc 49616]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YUA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YUA FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1N7:CHAPSO'>1N7</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1N7:CHAPSO'>1N7</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SAMEA4475700_01771 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=28197 ATCC 49616])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yua FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yua OCA], [http://pdbe.org/5yua PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yua RCSB], [http://www.ebi.ac.uk/pdbsum/5yua PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yua ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yua FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yua OCA], [http://pdbe.org/5yua PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yua RCSB], [http://www.ebi.ac.uk/pdbsum/5yua PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yua ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Voltage-gated sodium channels are crucial for electro-signalling in living systems. Analysis of the molecular mechanism requires both fine electrophysiological evaluation and high-resolution channel structures. Here, we optimized a dual expression system of NavAb, which is a well-established standard of prokaryotic voltage-gated sodium channels, for E. coli and insect cells using a single plasmid vector to analyse high-resolution protein structures and measure large ionic currents. Using this expression system, we evaluated the voltage dependence and determined the crystal structures of NavAb wild-type and two mutants, E32Q and N49K, whose voltage dependence were positively shifted and essential interactions were lost in voltage sensor domain. The structural and functional comparison elucidated the molecular mechanisms of the voltage dependence of prokaryotic voltage-gated sodium channels. | ||
| + | |||
| + | Optimized expression and purification of NavAb provide the structural insight into the voltage dependence.,Irie K, Haga Y, Shimomura T, Fujiyoshi Y FEBS Lett. 2017 Dec 22. doi: 10.1002/1873-3468.12955. PMID:29274127<ref>PMID:29274127</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 5yua" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Atcc 49616]] | ||
[[Category: Fujiyoshi, Y]] | [[Category: Fujiyoshi, Y]] | ||
[[Category: Irie, K]] | [[Category: Irie, K]] | ||
Revision as of 08:21, 17 January 2018
Crystal structure of voltage-gated sodium channel NavAb in high-pH condition
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