2cvz

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[[Image:2cvz.gif|left|200px]]
[[Image:2cvz.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 2cvz |SIZE=350|CAPTION= <scene name='initialview01'>2cvz</scene>, resolution 1.80&Aring;
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The line below this paragraph, containing "STRUCTURE_2cvz", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/3-hydroxyisobutyrate_dehydrogenase 3-hydroxyisobutyrate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.31 1.1.1.31] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE=
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|DOMAIN=
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{{STRUCTURE_2cvz| PDB=2cvz | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cvz OCA], [http://www.ebi.ac.uk/pdbsum/2cvz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2cvz RCSB]</span>
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}}
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'''Structure of hydroxyisobutyrate dehydrogenase from thermus thermophilus HB8'''
'''Structure of hydroxyisobutyrate dehydrogenase from thermus thermophilus HB8'''
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==About this Structure==
==About this Structure==
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2CVZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry 1J3V. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVZ OCA].
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2CVZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1j3v 1j3v]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CVZ OCA].
==Reference==
==Reference==
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[[Category: Miyano, M.]]
[[Category: Miyano, M.]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: hydroxyisobutyrate]]
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[[Category: Hydroxyisobutyrate]]
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[[Category: nadp+]]
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[[Category: Nadp+]]
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: Rsgi]]
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[[Category: structural genomic]]
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[[Category: Structural genomic]]
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[[Category: valine catabolism]]
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[[Category: Valine catabolism]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 23:11:02 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:27:04 2008''
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Revision as of 20:11, 3 May 2008

Image:2cvz.gif

Template:STRUCTURE 2cvz

Structure of hydroxyisobutyrate dehydrogenase from thermus thermophilus HB8


Overview

3-Hydroxyisobutyrate, a central metabolite in the valine catabolic pathway, is reversibly oxidized to methylmalonate semialdehyde by a specific dehydrogenase belonging to the 3-hydroxyacid dehydrogenase family. To gain insight into the function of this enzyme at the atomic level, we have determined the first crystal structures of the 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8: holo enzyme and sulfate ion complex. The crystal structures reveal a unique tetrameric oligomerization and a bound cofactor NADP+. This bacterial enzyme may adopt a novel cofactor-dependence on NADP, whereas NAD is preferred in eukaryotic enzymes. The protomer folds into two distinct domains with open/closed interdomain conformations. The cofactor NADP+ with syn nicotinamide and the sulfate ion are bound to distinct sites located at the interdomain cleft of the protomer through an induced-fit domain closure upon cofactor binding. From the structural comparison with the crystal structure of 6-phosphogluconate dehydrogenase, another member of the 3-hydroxyacid dehydrogenase family, it is suggested that the observed sulfate ion and the substrate 3-hydroxyisobutyrate share the same binding pocket. The observed oligomeric state might be important for the catalytic function through forming the active site involving two adjacent subunits, which seems to be conserved in the 3-hydroxyacid dehydrogenases. A kinetic study confirms that this enzyme has strict substrate specificity for 3-hydroxyisobutyrate and serine, but it cannot distinguish the chirality of the substrates. Lys165 is likely the catalytic residue of the enzyme.

About this Structure

2CVZ is a Single protein structure of sequence from Thermus thermophilus. This structure supersedes the now removed PDB entry 1j3v. Full crystallographic information is available from OCA.

Reference

Crystal structure of novel NADP-dependent 3-hydroxyisobutyrate dehydrogenase from Thermus thermophilus HB8., Lokanath NK, Ohshima N, Takio K, Shiromizu I, Kuroishi C, Okazaki N, Kuramitsu S, Yokoyama S, Miyano M, Kunishima N, J Mol Biol. 2005 Sep 30;352(4):905-17. PMID:16126223 Page seeded by OCA on Sat May 3 23:11:02 2008

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