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Biological Unit: Showing

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This article explains how to show the biological unit (biological assembly) in a scene in Proteopedia. If you simply want to see the biological unit, go to [[Biological Unit#Visualizing the Biological Unit|Visualizing the Biological Unit]]. For background, see [[Biological Unit]] and [[Asymmetric Unit]].
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:1. Go to the [http://watcut.uwaterloo.ca/cgi-bin/makemultimer/ MakeMultimer Server].
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This article explains how to show a biological unit (biological assembly) in a scene in Proteopedia. If you simply want to see the biological unit, go to [[Biological Unit#Visualizing the Biological Unit|Visualizing the Biological Unit]]. For background, see [[Biological Unit]] and [[Asymmetric Unit]].
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:2. Submit the [[PDB code]].
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:3. Click on the mm1.pdb link to download the biological assembly PDB file. For example, if you submitted [[1hho]], there will be a link to '''1hho_mm1.pdb'''.
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:Optionally you may examine all the biological units with the links to [[FirstGlance in Jmol]].
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:4. Upload the mm1.pdb file into Proteopedia, and use it in a molecular scene, following the instructions at [[Help:Uploading molecules]].
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You can also find the MakeMultimer Server with [[FirstGlance in Jmol]]. Every page in Proteopedia titled with a [[PDB code]] has a link to FirstGlance. While viewing the [[asymmetric unit]] in FirstGlance, click on ''Biological Unit'' (in the Molecule Information Tab, or the Resources Tab) and there you will find the link to MakeMultimer, along with an explanation of how to interpret the results.
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Revision as of 17:10, 12 November 2022

  UNDER DEVELOPMENT: This article is a work in progress, and is incomplete.  
For the date when the most recent work on this article was done, click on the history tab above.

This article explains how to show a biological unit (biological assembly) in a scene in Proteopedia. If you simply want to see the biological unit, go to Visualizing the Biological Unit. For background, see Biological Unit and Asymmetric Unit.

Proteopedia Page Contributors and Editors (what is this?)

Eric Martz

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