6c41
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | The | + | ==The clavanin peptide in the presence of TFE (2,2,2-trifluoroethanol), presented a amphipathic alpha-helices from Phe-2 to Val-22 residues== |
+ | <StructureSection load='6c41' size='340' side='right' caption='[[6c41]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6c41]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C41 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C41 FirstGlance]. <br> | ||
+ | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c41 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c41 OCA], [http://pdbe.org/6c41 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c41 RCSB], [http://www.ebi.ac.uk/pdbsum/6c41 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c41 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/CLAVA_STYCL CLAVA_STYCL]] Has antimicrobial activity. | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Clavanins is a class of peptides (23aa) histidine-rich, free of post-translational modifications. Clavanins have been studied largely for their ability to disrupt bacterial membranes. In the present study, the interaction of clavanin A with membranes was assessed by dynamic light scattering, zeta potential and permeabilization assays. We observed through those assays that clavanin A lysis bacterial cells at concentrations corresponding to its MIC. Further, the structure and function of clavanin A was investigated. To better understand how clavanin interacted with bacteria, its NMR structure was elucidated. The solution state NMR structure of clavanin A in the presence of TFE-d3 indicated an alpha-helical conformation. Secondary structures, based on circular dichroism measurements in anionic sodium dodecyl sulfate (SDS) and TFE (2,2,2-trifluorethanol), in silico lipid-peptide docking and molecular simulations with lipids DPPC and DOPC revealed that clavanin A can adopt a variety of folds, possibly influencing its different functions. Microcalorimetry assays revealed that clavanin A was capable of discriminating between different lipids. Finally, clavanin A was found to eradicate bacterial biofilms representing a previously unrecognized function. | ||
- | + | Structural Studies of a Lipid-Binding Peptide from Tunicate Hemocytes with Anti-Biofilm Activity.,Silva ON, Alves ES, de la Fuente-Nunez C, Ribeiro SM, Mandal SM, Gaspar D, Veiga AS, Castanho MA, Andrade CA, Nascimento JM, Fensterseifer IC, Porto WF, Correa JR, Hancock RE, Korpole S, Oliveira AL, Liao LM, Franco OL Sci Rep. 2016 Jun 13;6:27128. doi: 10.1038/srep27128. PMID:27292548<ref>PMID:27292548</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Liao, L | + | <div class="pdbe-citations 6c41" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Alves, E S.F]] | ||
+ | [[Category: Liao, L M]] | ||
+ | [[Category: Antimicrobial peptide]] | ||
+ | [[Category: Antimicrobial protein]] | ||
+ | [[Category: Biofilm]] |
Revision as of 06:20, 7 February 2018
The clavanin peptide in the presence of TFE (2,2,2-trifluoroethanol), presented a amphipathic alpha-helices from Phe-2 to Val-22 residues
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