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There were13 important binding residues from MIG-6_s1 and 9 residues from EGFR kinase with binding free energies less than-1 kcal/mol (Figure 8). The 13 residues of MIG-6_s1 comprise Ser337, Leu338, Pro339, Tyr341, Met346, Pro348, Thr349, Gln350, Phe352, Lys357, Tyr358, Val359 and Ser361 whereas the 9 residues of EGFR kinase were Thr885, Glu904, Gly906, Arg908, Pro910, Gln911, Pro913, Met928 and Ile929. Some of these residues, such as Pro910, Thr349, Gln350 and Tyr358, had the values of the binding free energies less than or equal to -4 kcal/mol. Five residues of MIG-6_s1, namely Leu342, <scene name='77/777689/Asn343/1'>ASN343</scene>, Ser351, Asp355, and Ser360 and seven residues of EGFR kinase, namely Glu907, Leu909, Pro912, Tyr920, Val924, Trp927 and Gly959, had their binding free energies approximately -1.0 kcal/mol. | There were13 important binding residues from MIG-6_s1 and 9 residues from EGFR kinase with binding free energies less than-1 kcal/mol (Figure 8). The 13 residues of MIG-6_s1 comprise Ser337, Leu338, Pro339, Tyr341, Met346, Pro348, Thr349, Gln350, Phe352, Lys357, Tyr358, Val359 and Ser361 whereas the 9 residues of EGFR kinase were Thr885, Glu904, Gly906, Arg908, Pro910, Gln911, Pro913, Met928 and Ile929. Some of these residues, such as Pro910, Thr349, Gln350 and Tyr358, had the values of the binding free energies less than or equal to -4 kcal/mol. Five residues of MIG-6_s1, namely Leu342, <scene name='77/777689/Asn343/1'>ASN343</scene>, Ser351, Asp355, and Ser360 and seven residues of EGFR kinase, namely Glu907, Leu909, Pro912, Tyr920, Val924, Trp927 and Gly959, had their binding free energies approximately -1.0 kcal/mol. | ||
| - | + | These are the hydrogen bonds formed between residues <scene name='77/777689/Ser337/1’>SER337</scene> | |
| - | + | and the residues Glu904, Gly906, Arg908, Gln911 and Ile929 of EGFR kinase. Strong, medium and weak hydrogen-bond interactions were defined as having simulated hydrogen bond occupancy of > 75%, 50–75%, and < 50%, respectively. | |
| - | + | ||
</StructureSection> | </StructureSection> | ||
Revision as of 01:11, 28 February 2018
| This Sandbox is Reserved from January through July 31, 2018 for use in the course HLSC322: Principles of Genetics and Genomics taught by Genevieve Houston-Ludlam at the University of Maryland, College Park, USA. This reservation includes Sandbox Reserved 1311 through Sandbox Reserved 1430. |
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EGFR kinase domain in complex with Mitogen-inducible gene 6 protein
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References
<2. http://www.rcsb.org/structure/4ZJV 3. https://www.ncbi.nlm.nih.gov/pubmed/25735773 4. https://www.ncbi.nlm.nih.gov/pubmed/16377102 5. https://www.ebi.ac.uk/pdbe/entry/pdb/4zjv/citations>
