This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

5z3s

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Revision as of 21:14, 28 October 2020

Crystal structure of butanol modified signaling protein from buffalo (SPB-40) at 1.65 A resolution

Structural highlights

5z3s is a 1 chain structure with sequence from Bubalus bubalis. This structure supersedes the now removed PDB entries 5yar, 5wsj and 4s19. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	, ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[CH3L1_BUBBU] Carbohydrate-binding lectin with a preference for chitin. May play a role in defense against pathogens, or in tissue remodeling. May play an important role in the capacity of cells to respond to and cope with changes in their environment (By similarity).

Publication Abstract from PubMed

Secretory signalling glycoprotein (SPX-40) from mammary gland is highly expressed during involution. This protein is involved in a programmed cell death during tissue remodelling which occurs at the end of lactation. SPX-40 was isolated and purified from buffalo (SPB-40) from the samples obtained during involution. One solution of SPB-40 was made by dissolving it in buffer containing 25mM Tris-HCl and 50mM NaCl at pH 8.0. Another solution was made by adding 25% ethanol to the above solution. The biological effects of SPB-40 dissolved in above two solutions were evaluated on MCF-7 breast cancer cell lines. Free SPB-40 indicated significant pro-apoptotic effects while ethanol exposed SPB-40 showed considerably reduced effects on the apoptosis. SPB-40 was crystallized in the native state. The crystals of SPB-40 were soaked in four separate solutions containing 25% acetone, 25% ethanol, 25% butanol and 25% MPD. Four separate data sets were collected and their structures were determined at high resolutions. In all the four structures, the molecules of acetone, ethanol, butanol and MPD respectively were observed in the hydrophobic binding pocket of SPB-40. As a result of which, the conformation of Trp78 was altered thus blocking the binding site in SPB-40 leading to the loss of activity.

A glycoprotein from mammary gland secreted during involution promotes apoptosis: Structural and biological studies.,Chaudhary A, Kumar V, Singh PK, Sharma P, Bairagya HR, Kaur P, Sharma S, Chauhan SS, Singh TP Arch Biochem Biophys. 2018 Mar 7;644:72-80. doi: 10.1016/j.abb.2018.03.006. PMID:29524427^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Chaudhary A, Kumar V, Singh PK, Sharma P, Bairagya HR, Kaur P, Sharma S, Chauhan SS, Singh TP. A glycoprotein from mammary gland secreted during involution promotes apoptosis: Structural and biological studies. Arch Biochem Biophys. 2018 Mar 7;644:72-80. doi: 10.1016/j.abb.2018.03.006. PMID:29524427 doi:http://dx.doi.org/10.1016/j.abb.2018.03.006

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5z3s"

@@ Line 1: / Line 1: @@
 ==Crystal structure of butanol modified signaling protein from buffalo (SPB-40) at 1.65 A resolution==
-<StructureSection load='5z3s' size='340' side='right' caption='[[5z3s]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+<StructureSection load='5z3s' size='340' side='right'caption='[[5z3s]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5z3s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bubalus_bubalis Bubalus bubalis]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5yar 5yar], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5wsj 5wsj] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4s19 4s19]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z3S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z3S FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5z3s]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bubalus_bubalis Bubalus bubalis]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5yar 5yar], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5wsj 5wsj] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4s19 4s19]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z3S OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Z3S FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1BO:1-BUTANOL'>1BO</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1BO:1-BUTANOL'>1BO</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z3s OCA], [http://pdbe.org/5z3s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z3s RCSB], [http://www.ebi.ac.uk/pdbsum/5z3s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z3s ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5z3s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z3s OCA], [http://pdbe.org/5z3s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z3s RCSB], [http://www.ebi.ac.uk/pdbsum/5z3s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z3s ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 20: / Line 20: @@
 ==See Also==
-*[[Chitinase-3-like protein|Chitinase-3-like protein]]
+*[[Chitinase-3-like protein 3D structures|Chitinase-3-like protein 3D structures]]
 == References ==
 <references/>
@@ Line 26: / Line 26: @@
 </StructureSection>
 [[Category: Bubalus bubalis]]
+[[Category: Large Structures]]
 [[Category: Chaudhary, A]]
 [[Category: Kaur, P]]

5z3s

From Proteopedia

Revision as of 21:14, 28 October 2020

Crystal structure of butanol modified signaling protein from buffalo (SPB-40) at 1.65 A resolution

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox