1tkw

From Proteopedia

(Difference between revisions)

Revision as of 11:54, 24 December 2020

The transient complex of poplar plastocyanin with turnip cytochrome f determined with paramagnetic NMR

Structural highlights

1tkw is a 2 chain structure with sequence from Brarr and Lombardy poplar. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	,
Related:	1hcz, 5pcy, 2pcf
Gene:	PETE (Lombardy poplar), PETA (BRARR)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[PLAS1_POPNI] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. [CYF_BRARR] Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The orientation of poplar plastocyanin in the complex with turnip cytochrome f has been determined by rigid-body calculations using restraints from paramagnetic NMR measurements. The results show that poplar plastocyanin interacts with cytochrome f with the hydrophobic patch of plastocyanin close to the heme region on cytochrome f and via electrostatic interactions between the charged patches on both proteins. Plastocyanin is tilted relative to the orientation reported for spinach plastocyanin, resulting in a longer distance between iron and copper (13.9 A). With increasing ionic strength, from 0.01 to 0.11 M, all observed chemical-shift changes decrease uniformly, supporting the idea that electrostatic forces contribute to complex formation. There is no indication for a rearrangement of the transient complex in this ionic strength range, contrary to what had been proposed earlier on the basis of kinetic data. By decreasing the pH from pH 7.7 to pH 5.5, the complex is destabilized. This may be attributed to the protonation of the conserved acidic patches or the copper ligand His87 in poplar plastocyanin, which are shown to have similar pK(a) values. The results are interpreted in a two-step model for complex formation.

The transient complex of poplar plastocyanin with cytochrome f: effects of ionic strength and pH.,Lange C, Cornvik T, Diaz-Moreno I, Ubbink M Biochim Biophys Acta. 2005 Apr-May;1707(2-3):179-88. Epub 2004 Dec 29. PMID:15863096^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Lange C, Cornvik T, Diaz-Moreno I, Ubbink M. The transient complex of poplar plastocyanin with cytochrome f: effects of ionic strength and pH. Biochim Biophys Acta. 2005 Apr-May;1707(2-3):179-88. Epub 2004 Dec 29. PMID:15863096 doi:10.1016/j.bbabio.2004.12.002

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1tkw"

@@ Line 1: / Line 1: @@
 ==The transient complex of poplar plastocyanin with turnip cytochrome f determined with paramagnetic NMR==
-<StructureSection load='1tkw' size='340' side='right' caption='[[1tkw]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+<StructureSection load='1tkw' size='340' side='right'caption='[[1tkw]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1tkw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brarr Brarr] and [http://en.wikipedia.org/wiki/Lombardy_poplar Lombardy poplar]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TKW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TKW FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1tkw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brarr Brarr] and [http://en.wikipedia.org/wiki/Lombardy_poplar Lombardy poplar]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TKW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TKW FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1hcz|1hcz]], [[5pcy|5pcy]], [[2pcf|2pcf]]</td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1hcz|1hcz]], [[5pcy|5pcy]], [[2pcf|2pcf]]</div></td></tr>
 <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3691 Lombardy poplar]), PETA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=51350 BRARR])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tkw OCA], [http://pdbe.org/1tkw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tkw RCSB], [http://www.ebi.ac.uk/pdbsum/1tkw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tkw ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tkw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tkw OCA], [http://pdbe.org/1tkw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tkw RCSB], [http://www.ebi.ac.uk/pdbsum/1tkw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tkw ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 32: / Line 32: @@
 ==See Also==
-*[[Cytochrome f|Cytochrome f]]
+*[[Cytochrome f 3D structures|Cytochrome f 3D structures]]
 == References ==
 <references/>
@@ Line 38: / Line 38: @@
 </StructureSection>
 [[Category: Brarr]]
+[[Category: Large Structures]]
 [[Category: Lombardy poplar]]
 [[Category: Cornvik, T]]

1tkw

From Proteopedia

Revision as of 11:54, 24 December 2020

The transient complex of poplar plastocyanin with turnip cytochrome f determined with paramagnetic NMR

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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