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6f4r
From Proteopedia
(Difference between revisions)
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==Human JMJD5 (N308C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-3)== | ==Human JMJD5 (N308C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-3)== | ||
| - | <StructureSection load='6f4r' size='340' side='right' caption='[[6f4r]], [[Resolution|resolution]] 1.30Å' scene=''> | + | <StructureSection load='6f4r' size='340' side='right'caption='[[6f4r]], [[Resolution|resolution]] 1.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[6f4r]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6F4R FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6f4r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6F4R FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=OGA:N-OXALYLGLYCINE'>OGA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6f4m|6f4m]], [[6f4n|6f4n]], [[6f4o|6f4o]], [[6f4p|6f4p]], [[6f4q|6f4q]], [[6f4s|6f4s]], [[6f4t|6f4t]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6f4m|6f4m]], [[6f4n|6f4n]], [[6f4o|6f4o]], [[6f4p|6f4p]], [[6f4q|6f4q]], [[6f4s|6f4s]], [[6f4t|6f4t]]</td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KDM8, JMJD5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/50S_ribosomal_protein_L16_3-hydroxylase 50S ribosomal protein L16 3-hydroxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.11.47 1.14.11.47] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/50S_ribosomal_protein_L16_3-hydroxylase 50S ribosomal protein L16 3-hydroxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.11.47 1.14.11.47] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6f4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f4r OCA], [http://pdbe.org/6f4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6f4r RCSB], [http://www.ebi.ac.uk/pdbsum/6f4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6f4r ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6f4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f4r OCA], [http://pdbe.org/6f4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6f4r RCSB], [http://www.ebi.ac.uk/pdbsum/6f4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6f4r ProSAT]</span></td></tr> | ||
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</div> | </div> | ||
<div class="pdbe-citations 6f4r" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 6f4r" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Jumonji domain-containing protein|Jumonji domain-containing protein]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: 50S ribosomal protein L16 3-hydroxylase]] | [[Category: 50S ribosomal protein L16 3-hydroxylase]] | ||
| - | [[Category: | + | [[Category: Human]] |
| + | [[Category: Large Structures]] | ||
| + | [[Category: Chowdhury, R]] | ||
[[Category: Islam, M S]] | [[Category: Islam, M S]] | ||
| - | [[Category: | + | [[Category: Schofield, C J]] |
[[Category: 2-oxoglutarate]] | [[Category: 2-oxoglutarate]] | ||
[[Category: 40s ribosomal protein s6]] | [[Category: 40s ribosomal protein s6]] | ||
Current revision
Human JMJD5 (N308C) in complex with Mn(II), NOG and RCCD1 (139-143) (complex-3)
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Categories: 50S ribosomal protein L16 3-hydroxylase | Human | Large Structures | Chowdhury, R | Islam, M S | Schofield, C J | 2-oxoglutarate | 40s ribosomal protein s6 | Arginine hydroxylation | Arginyl c-3 hydroxylase | Beta-hydroxylation | Cancer | Cell structure | Cytoplasm | Development | Dioxygenase | Dna-binding | Dsbh | Epigenetic regulation | Facial triad | Hydroxylation | Hypoxia | Iron | Jmjc | Jmjc demethylase | Jmjc domain | Jmjc domain-containing protein 5 | Jmjc hydroxylase | Jmjd5 | Kdm | Kdm8 | Lysine-specific demethylase 8 | Metal-binding | Non-heme | Oxidoreductase | Oxygenase | Phosphorylation | Polymorphism | Post-translational modification | Ptm | Rcc1 domain-containing protein 1 | Rccd1 | Regulator of chromosome condensation | Ribosome biogenesis | Rps6 | Signaling | Transcription | Transcription activator/inhibitor | Translation
