This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2gmi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:2gmi.jpg|left|200px]]
[[Image:2gmi.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 2gmi |SIZE=350|CAPTION= <scene name='initialview01'>2gmi</scene>, resolution 2.500&Aring;
+
The line below this paragraph, containing "STRUCTURE_2gmi", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND=
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Ubiquitin--protein_ligase Ubiquitin--protein ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.2.19 6.3.2.19] </span>
+
or leave the SCENE parameter empty for the default display.
-
|GENE= UBC13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae]), MMS2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])
+
-->
-
|DOMAIN=
+
{{STRUCTURE_2gmi| PDB=2gmi | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmi OCA], [http://www.ebi.ac.uk/pdbsum/2gmi PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2gmi RCSB]</span>
+
-
}}
+
'''Mms2/Ubc13~Ubiquitin'''
'''Mms2/Ubc13~Ubiquitin'''
Line 32: Line 29:
[[Category: Pickart, C M.]]
[[Category: Pickart, C M.]]
[[Category: Wolberger, C.]]
[[Category: Wolberger, C.]]
-
[[Category: e2]]
+
[[Category: E2]]
-
[[Category: mms2]]
+
[[Category: Mms2]]
-
[[Category: ubc13]]
+
[[Category: Ubc13]]
-
[[Category: ubc13 ubiquitin covalent complex,]]
+
[[Category: Ubc13 ubiquitin covalent complex]]
-
[[Category: ubiquitin]]
+
[[Category: Ubiquitin]]
-
[[Category: uev]]
+
[[Category: Uev]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 05:16:20 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:18:40 2008''
+

Revision as of 02:16, 4 May 2008

Template:STRUCTURE 2gmi

Mms2/Ubc13~Ubiquitin


Overview

Lys63-linked polyubiquitin chains participate in nonproteolytic signaling pathways, including regulation of DNA damage tolerance and NF-kappaB activation. E2 enzymes bound to ubiquitin E2 variants (UEV) are vital in these pathways, synthesizing Lys63-linked polyubiquitin chains, but how these complexes achieve specificity for a particular lysine linkage has been unclear. We have determined the crystal structure of an Mms2-Ubc13-ubiquitin (UEV-E2-Ub) covalent intermediate with donor ubiquitin linked to the active site residue of Ubc13. In the structure, the unexpected binding of a donor ubiquitin of one Mms2-Ubc13-Ub complex to the acceptor-binding site of Mms2-Ubc13 in an adjacent complex allows us to visualize at atomic resolution the molecular determinants of acceptor-ubiquitin binding. The structure reveals the key role of Mms2 in allowing selective insertion of Lys63 into the Ubc13 active site and suggests a molecular model for polyubiquitin chain elongation.

About this Structure

2GMI is a Protein complex structure of sequences from Homo sapiens and Saccharomyces cerevisiae. Full crystallographic information is available from OCA.

Reference

Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation., Eddins MJ, Carlile CM, Gomez KM, Pickart CM, Wolberger C, Nat Struct Mol Biol. 2006 Oct;13(10):915-20. Epub 2006 Sep 17. PMID:16980971 Page seeded by OCA on Sun May 4 05:16:20 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools