This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5y6q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:23, 22 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400==
==Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400==
-
<StructureSection load='5y6q' size='340' side='right' caption='[[5y6q]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='5y6q' size='340' side='right'caption='[[5y6q]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5y6q]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methylobacillus_sp._ky4400 Methylobacillus sp. ky4400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y6Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y6Q FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5y6q]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylobacillus_sp._KY4400 Methylobacillus sp. KY4400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y6Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y6Q FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=MCN:PTERIN+CYTOSINE+DINUCLEOTIDE'>MCN</scene>, <scene name='pdbligand=MOS:DIOXOTHIOMOLYBDENUM(VI)+ION'>MOS</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aoms ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=194289 Methylobacillus sp. KY4400]), aomm ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=194289 Methylobacillus sp. KY4400]), aoml ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=194289 Methylobacillus sp. KY4400])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=MCN:PTERIN+CYTOSINE+DINUCLEOTIDE'>MCN</scene>, <scene name='pdbligand=MOS:DIOXOTHIOMOLYBDENUM(VI)+ION'>MOS</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y6q OCA], [http://pdbe.org/5y6q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y6q RCSB], [http://www.ebi.ac.uk/pdbsum/5y6q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y6q ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y6q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y6q OCA], [https://pdbe.org/5y6q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y6q RCSB], [https://www.ebi.ac.uk/pdbsum/5y6q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y6q ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q84IY0_9PROT Q84IY0_9PROT]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Methylobacillus sp. ky4400]]
+
[[Category: Large Structures]]
-
[[Category: Mikami, B]]
+
[[Category: Methylobacillus sp. KY4400]]
-
[[Category: Uchida, H]]
+
[[Category: Mikami B]]
-
[[Category: Aldehyde oxidase molybdenum enzyme methylobacillus sp. ky4400]]
+
[[Category: Uchida H]]
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400

PDB ID 5y6q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools