Sandbox Reserved 1453

From Proteopedia

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You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
==Structure==
==Structure==
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The acetylcholine receptor is composed of five alpha helical chains each with about 370 amino acids. This is a transmembrane protein forming a funnel into the cytosol of the cell. Alpha and beta receptors
<scene name='77/778333/Acetylcholine/5'>Acetylcholine</scene>
<scene name='77/778333/Acetylcholine/5'>Acetylcholine</scene>
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== Function ==
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== Function as a Signal Molecule Receptor ==
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The neurotransmitter acetylcholine is released into the synaptic cleft and is bound to the acetylcholine receptor. Consequently, the receptor changes conformation to release potassium ions into the cytoplasm of the cell while sodium ions are ejected from the cell through the receptor acting as an ion-gated channel. This change in ion concentration causes a change in the membrane potential of the cell. The release of sodium into extracellular matrix causes a release of more acetylcholine in a neighboring cell continuing the action potential across nerve cells. Nerve cell communication is also in control of muscle contraction. When the action potential traveling down the nerve cell reaches muscle tissue, the muscle cell responds by triggering a release in calcium to allow for muscle contraction for the organism to move.
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== Response to Cobra Venom ==
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== Cobra Toxin ==
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Cobra venom has several detrimental effects on their prey. This toxin blocks the acetylcholine receptor which causes paralysis of the muscles, including the diaphragm which leads to asphyxiation. Only about 1/3 of the acetylcholine receptors need to be blocked to cease function of the diaphragm resulting in death in as little as thirty minutes.
<scene name='77/778333/Cobra_venom/1'>Cobra Venom</scene>
<scene name='77/778333/Cobra_venom/1'>Cobra Venom</scene>
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== Relevance ==
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== Cobra Toxin interaction with Acetyl Choline ==
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When cobra venom is introduced into the body is moves along the bloodstream to a diaphragm muscle. It works as a postsynaptic neurotoxin by interacting with OH group leaving the acetyl choline channel open which releases ions used in creating an action potential. Without the ions the diaphragm muscle can not be activated to contract and will not move so an individual can not take a breath.
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== Anti-Venom ==
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There are only two ways to save a life after being infected with cobra venom the first being an artificial respirator to contract and expand the lungs until the diaphragm is able to start an action potential and contract on its own. The other option to a quick administration of an anti-venom. Anti-venom acts to bind the venom both in the receptor and in the bloodstream and allows for it to be excreted out of the body.
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== Structural highlights ==
 
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

Revision as of 04:04, 19 April 2018

This Sandbox is Reserved from Jan 22 through May 22, 2018 for use in the course Biochemistry II taught by Jason Telford at the Maryville University, St. Louis, Missouri, USA. This reservation includes Sandbox Reserved 1446 through Sandbox Reserved 1455.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Acetylcholine receptor and its reaction to cobra venom

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
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