5zfx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5zfx is ON HOLD until Paper Publication
+
==Crystal Structure of Triosephosphate isomerase from Opisthorchis viverrini==
 +
<StructureSection load='5zfx' size='340' side='right' caption='[[5zfx]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5zfx]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZFX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZFX FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
 +
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zfx OCA], [http://pdbe.org/5zfx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zfx RCSB], [http://www.ebi.ac.uk/pdbsum/5zfx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zfx ProSAT]</span></td></tr>
 +
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Opisthorchis viverrini, a parasitic trematode, was recategorized as a group 1 biological carcinogen because it causes opisthorchiasis, which may result in cholangiocarcinoma. A new strategy for controlling opisthorchiasis is needed because of issues such as drug resistance and reinfection. Triosephosphate isomerase (TIM), a key enzyme in energy metabolism, is regarded as a potential drug target and vaccine candidate against various pathogens. Here, we determined the crystal structures of wild-type and 3 variants of TIMs from O. viverrini (OvTIM) at high resolution. The unique tripeptide of parasite trematodes, the SAD motif, was located on the surface of OvTIM and contributed to forming a 310-helix of the following loop in a sequence-independent manner. Through thermal stability and structural analyses of OvTIM variants, we found that the SAD motif induced local structural alterations of the surface and was involved in the overall stability of OvTIM in a complementary manner with another parasite-specific residue, N115. Comparison of the surface characteristics between OvTIM and Homo sapiens TIM (HsTIM) and structure-based epitope prediction suggested that the SAD motif functions as an epitope.
-
Authors: Son, J., Kim, S., Kim, S., Lee, H., Lee, M.R., Hwang, K.Y.
+
Structural Analysis of an Epitope Candidate of Triosephosphate Isomerase in Opisthorchis viverrini.,Son J, Kim S, Kim SE, Lee H, Lee MR, Hwang KY Sci Rep. 2018 Oct 10;8(1):15075. doi: 10.1038/s41598-018-33479-8. PMID:30305716<ref>PMID:30305716</ref>
-
Description: Crystal Structure of Triosephosphate isomerase from Opisthorchis viverrini
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
 +
<div class="pdbe-citations 5zfx" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Triose-phosphate isomerase]]
 +
[[Category: Hwang, K Y]]
[[Category: Kim, S]]
[[Category: Kim, S]]
 +
[[Category: Kim, S E]]
[[Category: Lee, H]]
[[Category: Lee, H]]
-
[[Category: Hwang, K.Y]]
+
[[Category: Lee, M R]]
-
[[Category: Lee, M.R]]
+
[[Category: Son, J]]
[[Category: Son, J]]
 +
[[Category: Isomerase]]
 +
[[Category: Tim-barrel]]
 +
[[Category: Triosephosphate isomerase]]

Revision as of 05:47, 24 October 2018

Crystal Structure of Triosephosphate isomerase from Opisthorchis viverrini

5zfx, resolution 1.75Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools