This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
6cxd
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution== | ==Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution== | ||
| - | <StructureSection load='6cxd' size='340' side='right' caption='[[6cxd]], [[Resolution|resolution]] 2.75Å' scene=''> | + | <StructureSection load='6cxd' size='340' side='right'caption='[[6cxd]], [[Resolution|resolution]] 2.75Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[6cxd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CXD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CXD FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6cxd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis_co92 Yersinia pestis co92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CXD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CXD FirstGlance]. <br> |
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pepB, YPO2889, y1342, YP_2566 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=214092 Yersinia pestis CO92])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/PepB_aminopeptidase PepB aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.23 3.4.11.23] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/PepB_aminopeptidase PepB aminopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.11.23 3.4.11.23] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cxd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cxd OCA], [http://pdbe.org/6cxd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cxd RCSB], [http://www.ebi.ac.uk/pdbsum/6cxd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cxd ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cxd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cxd OCA], [http://pdbe.org/6cxd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cxd RCSB], [http://www.ebi.ac.uk/pdbsum/6cxd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cxd ProSAT]</span></td></tr> | ||
| Line 10: | Line 11: | ||
== Function == | == Function == | ||
[[http://www.uniprot.org/uniprot/PEPB_YERPE PEPB_YERPE]] Probably plays an important role in intracellular peptide degradation. | [[http://www.uniprot.org/uniprot/PEPB_YERPE PEPB_YERPE]] Probably plays an important role in intracellular peptide degradation. | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Aminopeptidase 3D structures|Aminopeptidase 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: PepB aminopeptidase]] | [[Category: PepB aminopeptidase]] | ||
| + | [[Category: Yersinia pestis co92]] | ||
[[Category: Structural genomic]] | [[Category: Structural genomic]] | ||
[[Category: Cymborowski, M]] | [[Category: Cymborowski, M]] | ||
Revision as of 09:53, 18 December 2019
Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution
| |||||||||||
