This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5vop

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:53, 4 October 2023) (edit) (undo)
 
Line 1: Line 1:
==Methionine synthase folate-binding domain from Thermus thermophilus HB8 native==
==Methionine synthase folate-binding domain from Thermus thermophilus HB8 native==
-
<StructureSection load='5vop' size='340' side='right' caption='[[5vop]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='5vop' size='340' side='right'caption='[[5vop]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5vop]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VOP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VOP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5vop]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VOP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VOP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C2F:5-METHYL-5,6,7,8-TETRAHYDROFOLIC+ACID'>C2F</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5voo|5voo]], [[5von|5von]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2F:5-METHYL-5,6,7,8-TETRAHYDROFOLIC+ACID'>C2F</scene>, <scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TTHA0618 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vop OCA], [https://pdbe.org/5vop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vop RCSB], [https://www.ebi.ac.uk/pdbsum/5vop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vop ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vop OCA], [http://pdbe.org/5vop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vop RCSB], [http://www.ebi.ac.uk/pdbsum/5vop PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vop ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5SKM5_THET8 Q5SKM5_THET8]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 19:
</div>
</div>
<div class="pdbe-citations 5vop" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5vop" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Methionine synthase 3D structures|Methionine synthase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Thet8]]
+
[[Category: Large Structures]]
-
[[Category: Koutmos, M]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Yamada, K]]
+
[[Category: Koutmos M]]
-
[[Category: B12 binding]]
+
[[Category: Yamada K]]
-
[[Category: Methyltransferase]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Pterin binding]]
+
-
[[Category: Transferase]]
+

Current revision

Methionine synthase folate-binding domain from Thermus thermophilus HB8 native

PDB ID 5vop

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools