This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Bacteriorhodopsin

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 16: Line 16:
*Bacteriorhodopsin
*Bacteriorhodopsin
-
**[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]], [[4xxj]], [[4y9h]], [[5a44]], [[5a45]], [[5b34]], [[5b35]], [[5b6v]], [[5b6w]], [[5b6x]], [[5b6y]], [[5b6z]], [[5h2h]], [[5h2i]], [[5h2j]], [[5h2k]], [[5h2l]], [[5h2m]], [[5h2n]], [[5h2o]], [[5h2p]], [[5j7a]] – HsBr residues 14-261 + lipid + retinal – ''Halobacterium salinarum''<br />
+
**[[1bct]] - HsBr residues 163-231 – ''Halobacterium salinarum'' - NMR<br />
-
**[[3vhz]] - HsBr (mutant) + lipid + retinal<br />
+
**[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<br />
-
**[[2wjk]], [[2wjl]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
+
**[[1l0m]]– Br (mutant) – ''Halobacterium halobium'' – NMR<br />
-
**[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr residues 14-261 (mutant) + retinal<br />
+
**[[4pxk]] - Br (mutant) – ''Haloarcula marismortui''<br />
-
**[[2ntu]], [[1py6]], [[1fbb]], [[1fbk]], [[1brx]], [[1ap9]], [[1at9]], [[5br2]], [[5br5]] - HsBr residues 14-261 + retinal<br />
+
-
**[[4x31]], [[4x32]] - HsBr residues 14-261 + lipid + retinal<br />
+
-
**[[2at9]] - HsBr residues 14-261 + lipid + retinal – Cryo EM<br />
+
-
**[[1brd]] - HsBr residues 14-261 + retinal – Cryo EM<br />
+
-
**[[1s8j]], [[3t45]] - HsBr residues 14-261 (mutant) + lipid + NO3 + retinal<br />
+
-
**[[1mgy]] - HsBr residues 14-261 (mutant) + lipid + Br + retinal<br />
+
-
**[[1s8l]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
+
-
**[[4md1]], [[4md2]], [[4ov0]], [[5vn7]], [[5vn9]] - HsBr residues 14-261 + lipid<br />
+
-
**[[1qhj]] - HsBr residues 14-261 + phytanyl derivavative + retinal<br />
+
-
**[[4hwl]] – HsBr + heptane + hexane + retinal<br />
+
-
**[[1r84]], [[1r2n]] - HsBr residues 1-232 + retinal – NMR<BR />
+
-
**[[1bct]] - HsBr residues 163-231 – NMR<BR />
+
-
**[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<BR />
+
-
**[[1l0m]] – Br (mutant) – ''Halobacterium halobium'' - NMR<BR />
+
-
**[[4pxk]] - Br (mutant) – ''Haloarcula marismortuim''<br />
+
**[[4qi1]], [[4qid]], [[5itc]], [[5ite]], [[5kkh]] – HwBr-I – ''Haloquadratum walsbyi''<br />
**[[4qi1]], [[4qid]], [[5itc]], [[5ite]], [[5kkh]] – HwBr-I – ''Haloquadratum walsbyi''<br />
**[[4wav]] – HwBr-I (mutant)<br />
**[[4wav]] – HwBr-I (mutant)<br />
**[[5azd]] – Br – ''Thermus thermophilus''<br />
**[[5azd]] – Br – ''Thermus thermophilus''<br />
-
**[[5jsi]] – Br + lipid – ''Candidatus actinomarina''<br />
 
-
**[[5uk6]] – Br + lipid – ''Nostoc'' - NMR<br />
 
-
**[[6eyu]] – Br + lipid + retinal – ''Nonasalina''<br />
 
-
*Bacteriorhodopsin intermediates
+
*Bacteriorhodopsin complexes
-
**[[1f50]], [[1c8r]] - HsBr-BR residues 18-244 (mutant) + lipid + retinal<br />
+
**[[2ntu]], [[1py6]], [[1fbb]], [[1fbk]], [[1brx]], [[1ap9]], [[1at9]], [[5br2]], [[5br5]] - HsBr + retinal <br />
-
**[[1c3w]] - HsBr-BR residues 5-231 + lipid + retinal<br />
+
**[[1brd]] - HsBr + retinal – Cryo EM<br />
-
**[[2zfe]] – HsBr-K residues 14-261 + lipid + retinal<br />
+
**[[2wjk]], [[2wjl]], [[3vhz]], [[1s8l]], [[3t45]] - HsBr (mutant) + lipid + retinal<br />
-
**[[1m0k]], [[1m0l]], [[1ixf]] - HsBr-K residues 1-261 + lipid + retinal<br />
+
**[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr (mutant) + retinal<br />
-
**[[1m0m]] - HsBr-M1 residues 1-261 + lipid + retinal<br />
+
**[[4md1]], [[4md2]], [[4ov0]], [[5vn7]], [[5vn9]] - HsBr + lipid<br />
-
**[[1e0p]], [[2ntw]], [[1vjm]] - HsBr-L residues 18-245 + retinal<br />
+
**[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]], [[4xxj]], [[4y9h]], [[5a44]], [[5a45]], [[5b34]], [[5b35]], [[5b6v]], [[5b6w]], [[5b6x]], [[5b6y]], [[5b6z]], [[5h2h]], [[5h2i]], [[5h2j]], [[5h2k]], [[5h2l]], [[5h2m]], [[5h2n]], [[5h2o]], [[5h2p]], [[5j7a]], [[6g7h]], [[6g7i]], [[6g7j]], [[6g7k]], [[6g7l]], [[4x31]], [[4x32]], [[1c3w]], [[5zil]], [[5zim]], [[5zin] – HsBr + lipid + retinal<br />
-
**[[1ucq]], [[1iw9]], [[1o0a]] – HsBr-L residues 14-261 + lipid + retinal<br />
+
**[[2at9]] - HsBr + lipid + retinal – Cryo EM<br />
-
**[[1kg8]], [[1kg9]], [[1kgb]], [[1dze]], [[1cwq]], [[2zzl]], [[2i20]], [[2i21]], [[1p8h]] - HsBr-M residues 13-243 + lipid + retinal<br />
+
**[[1s8j]]- HsBr (mutant) + lipid + NO3 + retinal<br />
-
**[[1f4z]], [[1c8s]], [[1p8i]] - HsBr-M residues 18-244 (mutant) + lipid + retinal<br />
+
**[[1mgy]] - HsBr (mutant) + lipid + Br + retinal<br />
-
**[[1p8u]] – HsBr-N residues 14-261 (mutant) + lipid + retinal<br />
+
**[[1qhj]] - HsBr + phytanyl derivavative + retinal<br />
-
**[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O residues 1-261 (mutant) + lipid + retinal<br />
+
**[[4hwl]] – HsBr + heptane + hexane + retinal<br />
-
**[[1qko]], [[1qkp]] - HsBr residues 14-261 + retinal<br />
+
**[[4hwl]] – HsBr + decane + hexane + tetradecane + octane + retinal<br />
 +
**[[1r84]], [[1r2n]] - HsBr + retinal – NMR<br />
 +
**[[1f50]], [[1c8r]] - HsBr-BR (mutant) + lipid + retinal <br />
 +
**[[1m0k]], [[1m0l]], [[1ixf]], [[2zfe]]- HsBr-K + lipid + retinal<br />
 +
**[[1e0p]], [[2ntw]], [[1vjm]] - HsBr-L + retinal<br />
 +
**[[1ucq]], [[1iw9]], [[1o0a]] – HsBr-L + lipid + retinal<br />
 +
**[[1kg8]], [[1kg9]], [[1kgb]], [[1dze]], [[1cwq]], [[2zzl]], [[2i20]], [[2i21]], [[1p8h]], [[1m0m]] - HsBr-M + lipid + retinal<br />
 +
**[[1f4z]], [[1c8s]], [[1p8i]] - HsBr-M (mutant) + lipid + retinal<br />
 +
**[[1p8u]] – HsBr-N (mutant) + lipid + retinal<br />
 +
**[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O (mutant) + lipid + retinal<br />
 +
**[[1qko]], [[1qkp]] - HsBr + retinal<br />
 +
**[[5jsi]] – Br + lipid – ''Candidatus actinomarina''<br />
 +
**[[5uk6]] – Br + lipid – Nostoc - NMR<br />
*Halorhodopsin
*Halorhodopsin
**[[3abw]], [[3a7k]], [[3vvk]] – NpBr+ N3 + bacterioruberin + detergent + retinal – ''Natronomonas pharaonis''<br />
**[[3abw]], [[3a7k]], [[3vvk]] – NpBr+ N3 + bacterioruberin + detergent + retinal – ''Natronomonas pharaonis''<br />
-
**[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]] - NpBr + bacterioruberin + detergent + retinal<br />
+
**[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]], [[5etz]] - NpBr + bacterioruberin + detergent + retinal<br />
 +
**[[5b0w]] - NpBr + bacterioruberin + detergent + retinal + Ile<br />
 +
**[[4qry]] - NpBr + Br + detergent + retinal<br />
 +
**[[5ahy]], [[5ahz]], [[5g36]] - HsBr + detergent + retinal<br />
**[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal<br />
**[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal<br />
Line 68: Line 65:
**[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br />
**[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br />
**[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br />
**[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br />
-
**[[4gyc]] - NpBr + retinal + eicosane + lipid + Br transducer<br />
+
**[[4gyc]], [[5jje]], [[5jjf]], [[5jjj]], [[5jjn]] - NpBr + retinal + eicosane + lipid + Br transducer<br />
**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]] - NpBr + retinal<br />
**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]] - NpBr + retinal<br />
**[[1xio]] - AnBr + detergent + retinal - ''Anabaena''<br />
**[[1xio]] - AnBr + detergent + retinal - ''Anabaena''<br />
Line 84: Line 81:
**[[1uaz]] - HaBr + retinal<br />
**[[1uaz]] - HaBr + retinal<br />
-
*Proteorhodopsin
+
*Blue-light absorbing proteorhodopsin
-
**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br />
 
**[[4kly]], [[4knf]] - GpPRn + retinal<br />
**[[4kly]], [[4knf]] - GpPRn + retinal<br />
-
**[[4jq6]] – PRn + retinal + lipid<br />
+
**[[4jq6]] – PRn + retinal + lipid - uncultured bacteria<br />
 +
 
 +
*Green-light absorbing proteorhodopsin
 +
 
 +
**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br />
 +
**[[5abb]] – PRn residues 19-83 + protein translocase – Escherichia coli<br />
*Deltarhodopsin
*Deltarhodopsin
**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />
**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />
 +
 +
*Xenorhodopsin
 +
 +
**[[6eyu]] - Rn + eicosane + lipid + retinal – ''Nanosalina''<br />
}}
}}

Revision as of 11:04, 31 March 2019

Bacteriorhodopsin complex with retinal, 3han

Drag the structure with the mouse to rotate

3D Structures of bacteriorhodopsin

Updated on 31-March-2019 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Bacteriorhodopsin
    • 1bct - HsBr residues 163-231 – Halobacterium salinarum - NMR
    • 1bha, 1bhb - HsBr residues 1-71 - NMR
    • 1l0m– Br (mutant) – Halobacterium halobium – NMR
    • 4pxk - Br (mutant) – Haloarcula marismortui
    • 4qi1, 4qid, 5itc, 5ite, 5kkh – HwBr-I – Haloquadratum walsbyi
    • 4wav – HwBr-I (mutant)
    • 5azd – Br – Thermus thermophilus
  • Bacteriorhodopsin complexes
  • Halorhodopsin
    • 3abw, 3a7k, 3vvk – NpBr+ N3 + bacterioruberin + detergent + retinal – Natronomonas pharaonis
    • 3qbg, 3qbi, 3qbk, 3qbl, 5etz - NpBr + bacterioruberin + detergent + retinal
    • 5b0w - NpBr + bacterioruberin + detergent + retinal + Ile
    • 4qry - NpBr + Br + detergent + retinal
    • 5ahy, 5ahz, 5g36 - HsBr + detergent + retinal
    • 2jaf, 2jag, 1e12 - HsBr (mutant) + lipid+ retinal
  • Sensory rhodopsin II
    • 2ksy – NpBr – NMR
    • 2f93, 2f95, 1h2s - BpBr + Br transducer + detergent + retinal
    • 3qap, 3qdc - NpBr + eicosane + lipid + retinal
    • 4gyc, 5jje, 5jjf, 5jjj, 5jjn - NpBr + retinal + eicosane + lipid + Br transducer
    • 1gu8, 1gue, 1h68, 1jgj - NpBr + retinal
    • 1xio - AnBr + detergent + retinal - Anabaena
    • 4tl3 - AnBr (mutant) + detergent + retinal
    • 2m3g - AnBr + detergent - NMR
  • Xanthorhodopsin
    • 3ddl – Br + detergent + salinixanthin + retinal – Salinibacter ruber
  • Archaerhodopsin
    • 2ei4, 2z55 – HaBr + bacterioruberin + detergent + retinal – Halobacterium
    • 1vgo - HaBr + detergent + retinal
    • 1uaz - HaBr + retinal
  • Blue-light absorbing proteorhodopsin
    • 4kly, 4knf - GpPRn + retinal
    • 4jq6 – PRn + retinal + lipid - uncultured bacteria
  • Green-light absorbing proteorhodopsin
    • 2l6x - GpPRn + detergents + retinal – Gamma proteobacterium
    • 5abb – PRn residues 19-83 + protein translocase – Escherichia coli
  • Deltarhodopsin
    • 4fbz - Rn + bacterioruberin + retinal – Haloterrigena thermotolerans
  • Xenorhodopsin
    • 6eyu - Rn + eicosane + lipid + retinal – Nanosalina

}}

See Also




References

  1. ↑ Joh NH, Oberai A, Yang D, Whitelegge JP, Bowie JU. Similar energetic contributions of packing in the core of membrane and water-soluble proteins. J Am Chem Soc. 2009 Aug 12;131(31):10846-7. PMID:19603754 doi:10.1021/ja904711k
Retrieved from "http://52.214.119.220/wiki/index.php/Bacteriorhodopsin"
Personal tools
In other languages