We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Bacteriorhodopsin

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 16: Line 16:
*Bacteriorhodopsin
*Bacteriorhodopsin
-
**[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]], [[4xxj]], [[4y9h]], [[5a44]], [[5a45]], [[5b34]], [[5b35]], [[5b6v]], [[5b6w]], [[5b6x]], [[5b6y]], [[5b6z]], [[5h2h]], [[5h2i]], [[5h2j]], [[5h2k]], [[5h2l]], [[5h2m]], [[5h2n]], [[5h2o]], [[5h2p]], [[5j7a]] – HsBr residues 14-261 + lipid + retinal – ''Halobacterium salinarum''<br />
+
**[[1bct]] - HsBr residues 163-231 – ''Halobacterium salinarum'' - NMR<br />
-
**[[3vhz]] - HsBr (mutant) + lipid + retinal<br />
+
**[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<br />
-
**[[2wjk]], [[2wjl]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
+
**[[1l0m]]– Br (mutant) – ''Halobacterium halobium'' – NMR<br />
-
**[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr residues 14-261 (mutant) + retinal<br />
+
**[[4pxk]] - Br (mutant) – ''Haloarcula marismortui''<br />
-
**[[2ntu]], [[1py6]], [[1fbb]], [[1fbk]], [[1brx]], [[1ap9]], [[1at9]], [[5br2]], [[5br5]] - HsBr residues 14-261 + retinal<br />
+
-
**[[4x31]], [[4x32]] - HsBr residues 14-261 + lipid + retinal<br />
+
-
**[[2at9]] - HsBr residues 14-261 + lipid + retinal – Cryo EM<br />
+
-
**[[1brd]] - HsBr residues 14-261 + retinal – Cryo EM<br />
+
-
**[[1s8j]], [[3t45]] - HsBr residues 14-261 (mutant) + lipid + NO3 + retinal<br />
+
-
**[[1mgy]] - HsBr residues 14-261 (mutant) + lipid + Br + retinal<br />
+
-
**[[1s8l]] - HsBr residues 14-261 (mutant) + lipid + retinal<br />
+
-
**[[4md1]], [[4md2]], [[4ov0]], [[5vn7]], [[5vn9]] - HsBr residues 14-261 + lipid<br />
+
-
**[[1qhj]] - HsBr residues 14-261 + phytanyl derivavative + retinal<br />
+
-
**[[4hwl]] – HsBr + heptane + hexane + retinal<br />
+
-
**[[1r84]], [[1r2n]] - HsBr residues 1-232 + retinal – NMR<BR />
+
-
**[[1bct]] - HsBr residues 163-231 – NMR<BR />
+
-
**[[1bha]], [[1bhb]] - HsBr residues 1-71 - NMR<BR />
+
-
**[[1l0m]] – Br (mutant) – ''Halobacterium halobium'' - NMR<BR />
+
-
**[[4pxk]] - Br (mutant) – ''Haloarcula marismortuim''<br />
+
**[[4qi1]], [[4qid]], [[5itc]], [[5ite]], [[5kkh]] – HwBr-I – ''Haloquadratum walsbyi''<br />
**[[4qi1]], [[4qid]], [[5itc]], [[5ite]], [[5kkh]] – HwBr-I – ''Haloquadratum walsbyi''<br />
**[[4wav]] – HwBr-I (mutant)<br />
**[[4wav]] – HwBr-I (mutant)<br />
**[[5azd]] – Br – ''Thermus thermophilus''<br />
**[[5azd]] – Br – ''Thermus thermophilus''<br />
-
**[[5jsi]] – Br + lipid – ''Candidatus actinomarina''<br />
 
-
**[[5uk6]] – Br + lipid – ''Nostoc'' - NMR<br />
 
-
**[[6eyu]] – Br + lipid + retinal – ''Nonasalina''<br />
 
-
*Bacteriorhodopsin intermediates
+
*Bacteriorhodopsin complexes
-
**[[1f50]], [[1c8r]] - HsBr-BR residues 18-244 (mutant) + lipid + retinal<br />
+
**[[2ntu]], [[1py6]], [[1fbb]], [[1fbk]], [[1brx]], [[1ap9]], [[1at9]], [[5br2]], [[5br5]] - HsBr + retinal <br />
-
**[[1c3w]] - HsBr-BR residues 5-231 + lipid + retinal<br />
+
**[[1brd]] - HsBr + retinal – Cryo EM<br />
-
**[[2zfe]] – HsBr-K residues 14-261 + lipid + retinal<br />
+
**[[2wjk]], [[2wjl]], [[3vhz]], [[1s8l]], [[3t45]] - HsBr (mutant) + lipid + retinal<br />
-
**[[1m0k]], [[1m0l]], [[1ixf]] - HsBr-K residues 1-261 + lipid + retinal<br />
+
**[[3han]], [[2hao]], [[3hap]], [[3haq]], [[3har]], [[3has]], [[3coc]], [[3cod]], [[1tn5]], [[1tn0]], [[1s51]], [[1s52]], [[1s53]], [[1s54]], [[1q5i]], [[1q5j]], [[1pxr]], [[1pxs]], [[3hao]], [[3utv]], [[3utw]], [[3utx]], [[3uty]] - HsBr (mutant) + retinal<br />
-
**[[1m0m]] - HsBr-M1 residues 1-261 + lipid + retinal<br />
+
**[[4md1]], [[4md2]], [[4ov0]], [[5vn7]], [[5vn9]] - HsBr + lipid<br />
-
**[[1e0p]], [[2ntw]], [[1vjm]] - HsBr-L residues 18-245 + retinal<br />
+
**[[3ns0]], [[3nsb]], [[3mbv]], [[1x0s]], [[1x0i]], [[1x0k]], [[1xji]], [[1iw6]], [[4fpd]], [[2i1x]], [[1kme]], [[1qm8]], [[1bm1]], [[1brr]], [[2brd]], [[4hyx]], [[4xxj]], [[4y9h]], [[5a44]], [[5a45]], [[5b34]], [[5b35]], [[5b6v]], [[5b6w]], [[5b6x]], [[5b6y]], [[5b6z]], [[5h2h]], [[5h2i]], [[5h2j]], [[5h2k]], [[5h2l]], [[5h2m]], [[5h2n]], [[5h2o]], [[5h2p]], [[5j7a]], [[6g7h]], [[6g7i]], [[6g7j]], [[6g7k]], [[6g7l]], [[4x31]], [[4x32]], [[1c3w]], [[5zil]], [[5zim]], [[5zin] – HsBr + lipid + retinal<br />
-
**[[1ucq]], [[1iw9]], [[1o0a]] – HsBr-L residues 14-261 + lipid + retinal<br />
+
**[[2at9]] - HsBr + lipid + retinal – Cryo EM<br />
-
**[[1kg8]], [[1kg9]], [[1kgb]], [[1dze]], [[1cwq]], [[2zzl]], [[2i20]], [[2i21]], [[1p8h]] - HsBr-M residues 13-243 + lipid + retinal<br />
+
**[[1s8j]]- HsBr (mutant) + lipid + NO3 + retinal<br />
-
**[[1f4z]], [[1c8s]], [[1p8i]] - HsBr-M residues 18-244 (mutant) + lipid + retinal<br />
+
**[[1mgy]] - HsBr (mutant) + lipid + Br + retinal<br />
-
**[[1p8u]] – HsBr-N residues 14-261 (mutant) + lipid + retinal<br />
+
**[[1qhj]] - HsBr + phytanyl derivavative + retinal<br />
-
**[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O residues 1-261 (mutant) + lipid + retinal<br />
+
**[[4hwl]] – HsBr + heptane + hexane + retinal<br />
-
**[[1qko]], [[1qkp]] - HsBr residues 14-261 + retinal<br />
+
**[[4hwl]] – HsBr + decane + hexane + tetradecane + octane + retinal<br />
 +
**[[1r84]], [[1r2n]] - HsBr + retinal – NMR<br />
 +
**[[1f50]], [[1c8r]] - HsBr-BR (mutant) + lipid + retinal <br />
 +
**[[1m0k]], [[1m0l]], [[1ixf]], [[2zfe]]- HsBr-K + lipid + retinal<br />
 +
**[[1e0p]], [[2ntw]], [[1vjm]] - HsBr-L + retinal<br />
 +
**[[1ucq]], [[1iw9]], [[1o0a]] – HsBr-L + lipid + retinal<br />
 +
**[[1kg8]], [[1kg9]], [[1kgb]], [[1dze]], [[1cwq]], [[2zzl]], [[2i20]], [[2i21]], [[1p8h]], [[1m0m]] - HsBr-M + lipid + retinal<br />
 +
**[[1f4z]], [[1c8s]], [[1p8i]] - HsBr-M (mutant) + lipid + retinal<br />
 +
**[[1p8u]] – HsBr-N (mutant) + lipid + retinal<br />
 +
**[[1jv6]], [[1jv7]], [[3vi0]] - HsBr-O (mutant) + lipid + retinal<br />
 +
**[[1qko]], [[1qkp]] - HsBr + retinal<br />
 +
**[[5jsi]] – Br + lipid – ''Candidatus actinomarina''<br />
 +
**[[5uk6]] – Br + lipid – Nostoc - NMR<br />
*Halorhodopsin
*Halorhodopsin
**[[3abw]], [[3a7k]], [[3vvk]] – NpBr+ N3 + bacterioruberin + detergent + retinal – ''Natronomonas pharaonis''<br />
**[[3abw]], [[3a7k]], [[3vvk]] – NpBr+ N3 + bacterioruberin + detergent + retinal – ''Natronomonas pharaonis''<br />
-
**[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]] - NpBr + bacterioruberin + detergent + retinal<br />
+
**[[3qbg]], [[3qbi]], [[3qbk]], [[3qbl]], [[5etz]] - NpBr + bacterioruberin + detergent + retinal<br />
 +
**[[5b0w]] - NpBr + bacterioruberin + detergent + retinal + Ile<br />
 +
**[[4qry]] - NpBr + Br + detergent + retinal<br />
 +
**[[5ahy]], [[5ahz]], [[5g36]] - HsBr + detergent + retinal<br />
**[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal<br />
**[[2jaf]], [[2jag]], [[1e12]] - HsBr (mutant) + lipid+ retinal<br />
Line 68: Line 65:
**[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br />
**[[2f93]], [[2f95]], [[1h2s]] - BpBr + Br transducer + detergent + retinal<br />
**[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br />
**[[3qap]], [[3qdc]] - NpBr + eicosane + lipid + retinal<br />
-
**[[4gyc]] - NpBr + retinal + eicosane + lipid + Br transducer<br />
+
**[[4gyc]], [[5jje]], [[5jjf]], [[5jjj]], [[5jjn]] - NpBr + retinal + eicosane + lipid + Br transducer<br />
**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]] - NpBr + retinal<br />
**[[1gu8]], [[1gue]], [[1h68]], [[1jgj]] - NpBr + retinal<br />
**[[1xio]] - AnBr + detergent + retinal - ''Anabaena''<br />
**[[1xio]] - AnBr + detergent + retinal - ''Anabaena''<br />
Line 84: Line 81:
**[[1uaz]] - HaBr + retinal<br />
**[[1uaz]] - HaBr + retinal<br />
-
*Proteorhodopsin
+
*Blue-light absorbing proteorhodopsin
-
**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br />
 
**[[4kly]], [[4knf]] - GpPRn + retinal<br />
**[[4kly]], [[4knf]] - GpPRn + retinal<br />
-
**[[4jq6]] – PRn + retinal + lipid<br />
+
**[[4jq6]] – PRn + retinal + lipid - uncultured bacteria<br />
 +
 
 +
*Green-light absorbing proteorhodopsin
 +
 
 +
**[[2l6x]] - GpPRn + detergents + retinal – ''Gamma proteobacterium''<br />
 +
**[[5abb]] – PRn residues 19-83 + protein translocase – Escherichia coli<br />
*Deltarhodopsin
*Deltarhodopsin
**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />
**[[4fbz]] - Rn + bacterioruberin + retinal – ''Haloterrigena thermotolerans''<br />
 +
 +
*Xenorhodopsin
 +
 +
**[[6eyu]] - Rn + eicosane + lipid + retinal – ''Nanosalina''<br />
}}
}}

Revision as of 11:04, 31 March 2019

Bacteriorhodopsin complex with retinal, 3han

Drag the structure with the mouse to rotate

3D Structures of bacteriorhodopsin

Updated on 31-March-2019 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Bacteriorhodopsin
    • 1bct - HsBr residues 163-231 – Halobacterium salinarum - NMR
    • 1bha, 1bhb - HsBr residues 1-71 - NMR
    • 1l0m– Br (mutant) – Halobacterium halobium – NMR
    • 4pxk - Br (mutant) – Haloarcula marismortui
    • 4qi1, 4qid, 5itc, 5ite, 5kkh – HwBr-I – Haloquadratum walsbyi
    • 4wav – HwBr-I (mutant)
    • 5azd – Br – Thermus thermophilus
  • Bacteriorhodopsin complexes
  • Halorhodopsin
    • 3abw, 3a7k, 3vvk – NpBr+ N3 + bacterioruberin + detergent + retinal – Natronomonas pharaonis
    • 3qbg, 3qbi, 3qbk, 3qbl, 5etz - NpBr + bacterioruberin + detergent + retinal
    • 5b0w - NpBr + bacterioruberin + detergent + retinal + Ile
    • 4qry - NpBr + Br + detergent + retinal
    • 5ahy, 5ahz, 5g36 - HsBr + detergent + retinal
    • 2jaf, 2jag, 1e12 - HsBr (mutant) + lipid+ retinal
  • Sensory rhodopsin II
    • 2ksy – NpBr – NMR
    • 2f93, 2f95, 1h2s - BpBr + Br transducer + detergent + retinal
    • 3qap, 3qdc - NpBr + eicosane + lipid + retinal
    • 4gyc, 5jje, 5jjf, 5jjj, 5jjn - NpBr + retinal + eicosane + lipid + Br transducer
    • 1gu8, 1gue, 1h68, 1jgj - NpBr + retinal
    • 1xio - AnBr + detergent + retinal - Anabaena
    • 4tl3 - AnBr (mutant) + detergent + retinal
    • 2m3g - AnBr + detergent - NMR
  • Xanthorhodopsin
    • 3ddl – Br + detergent + salinixanthin + retinal – Salinibacter ruber
  • Archaerhodopsin
    • 2ei4, 2z55 – HaBr + bacterioruberin + detergent + retinal – Halobacterium
    • 1vgo - HaBr + detergent + retinal
    • 1uaz - HaBr + retinal
  • Blue-light absorbing proteorhodopsin
    • 4kly, 4knf - GpPRn + retinal
    • 4jq6 – PRn + retinal + lipid - uncultured bacteria
  • Green-light absorbing proteorhodopsin
    • 2l6x - GpPRn + detergents + retinal – Gamma proteobacterium
    • 5abb – PRn residues 19-83 + protein translocase – Escherichia coli
  • Deltarhodopsin
    • 4fbz - Rn + bacterioruberin + retinal – Haloterrigena thermotolerans
  • Xenorhodopsin
    • 6eyu - Rn + eicosane + lipid + retinal – Nanosalina

}}

See Also




References

  1. ↑ Joh NH, Oberai A, Yang D, Whitelegge JP, Bowie JU. Similar energetic contributions of packing in the core of membrane and water-soluble proteins. J Am Chem Soc. 2009 Aug 12;131(31):10846-7. PMID:19603754 doi:10.1021/ja904711k
Retrieved from "http://52.214.119.220/wiki/index.php/Bacteriorhodopsin"
Personal tools
In other languages