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6bdd

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Crystal structure of Fe(II) unliganded H-NOX protein from K. algicida

Structural highlights

6bdd is a 1 chain structure with sequence from Kordia algicida OT-1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.901Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A9DSJ8_9FLAO

Publication Abstract from PubMed

Heme nitric oxide/oxygen sensing (H-NOX) domains are direct NO sensors that regulate a variety of biological functions in both bacteria and eukaryotes. Previous work on H-NOX proteins has shown that upon NO binding, a conformational change occurs along two glycine residues on adjacent helices (termed the glycine hinge). Despite the apparent importance of the glycine hinge, it is not fully conserved in all H-NOX domains. Several H-NOX sensors from the family Flavobacteriaceae contain a native alanine substitution in one of the hinge residues. In this work, the effect of the increased steric bulk within the Ala-Gly hinge on H-NOX function was investigated. The hinge in Kordia algicida OT-1 ( Ka H-NOX) is composed of A71 and G145. Ligand-binding properties and signaling function for this H-NOX were characterized. The variant A71G was designed to convert the hinge region of Ka H-NOX to the typical Gly-Gly motif. In activity assays with its cognate histidine kinase (HnoK), the wild type displayed increased signal specificity compared to A71G. Increasing titrations of unliganded A71G gradually inhibits HnoK autophosphorylation, while increasing titrations of unliganded wild type H-NOX does not inhibit HnoK. Crystal structures of both wild type and A71G Ka H-NOX were solved to 1.9 and 1.6 A, respectively. Regions of H-NOX domains previously identified as involved in protein-protein interactions with HnoK display significantly higher b-factors in A71G compared to wild-type H-NOX. Both biochemical and structural data indicate that the hinge region controls overall conformational flexibility of the H-NOX, affecting NO complex formation and regulation of its HnoK.

Native Alanine Substitution in the Glycine Hinge Modulates Conformational Flexibility of Heme Nitric Oxide/Oxygen (H-NOX) Sensing Proteins.,Hespen CW, Bruegger JJ, Guo Y, Marletta MA ACS Chem Biol. 2018 May 29. doi: 10.1021/acschembio.8b00248. PMID:29757599^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Hespen CW, Bruegger JJ, Guo Y, Marletta MA. Native Alanine Substitution in the Glycine Hinge Modulates Conformational Flexibility of Heme Nitric Oxide/Oxygen (H-NOX) Sensing Proteins. ACS Chem Biol. 2018 May 29. doi: 10.1021/acschembio.8b00248. PMID:29757599 doi:http://dx.doi.org/10.1021/acschembio.8b00248

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6bdd"

Categories: Kordia algicida OT-1 | Large Structures | Bruegger JJ | Hespen CW | Marletta MA

@@ Line 1: / Line 1: @@
 ==Crystal structure of Fe(II) unliganded H-NOX protein from K. algicida==
-<StructureSection load='6bdd' size='340' side='right' caption='[[6bdd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='6bdd' size='340' side='right'caption='[[6bdd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6bdd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Kordia_algicida_nbrc_10036 Kordia algicida nbrc 10036]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BDD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6BDD FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6bdd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Kordia_algicida_OT-1 Kordia algicida OT-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6BDD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6BDD FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.901&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6bde|6bde]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KAOT1_17313 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=391587 Kordia algicida NBRC 10036])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6bdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bdd OCA], [https://pdbe.org/6bdd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6bdd RCSB], [https://www.ebi.ac.uk/pdbsum/6bdd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6bdd ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6bdd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6bdd OCA], [http://pdbe.org/6bdd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6bdd RCSB], [http://www.ebi.ac.uk/pdbsum/6bdd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6bdd ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/A9DSJ8_9FLAO A9DSJ8_9FLAO]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 18: / Line 19: @@
 </div>
 <div class="pdbe-citations 6bdd" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Aldolase 3D structures|Aldolase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Kordia algicida nbrc 10036]]
+[[Category: Kordia algicida OT-1]]
-[[Category: Bruegger, J J]]
+[[Category: Large Structures]]
-[[Category: Hespen, C W]]
+[[Category: Bruegger JJ]]
-[[Category: Marletta, M A]]
+[[Category: Hespen CW]]
-[[Category: Heme nitric oxide/oxygen sensing protein]]
+[[Category: Marletta MA]]
-[[Category: Nitric oxide signaling]]
-[[Category: Signaling protein]]

6bdd

From Proteopedia

Current revision

Crystal structure of Fe(II) unliganded H-NOX protein from K. algicida

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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