Dihedral/Index
From Proteopedia
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* '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]''' | * '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]''' | ||
** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]]) | ** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]]) | ||
| - | ** That tutorial repurposed as a [http://tinyurl.com/RamachandranPrinciple slideshow] in English | + | ** That tutorial repurposed as a '''slideshow''' with animated images (a Google Docs presentation): |
| - | ** | + | *** [http://tinyurl.com/RamachandranPrinciple slideshow] in English |
| - | ** [[Dihedral/Ramachandran_Principle_Quiz| | + | *** [http://tinyurl.com/PrincipioRamachandran slideshow] in Spanish |
| - | ** [[Dihedral/Ramachandran_Principle_Quiz (Spanish)| | + | ** A '''quiz''' to self-assess understanding of the tutorial or the slideshow: |
| + | *** [[Dihedral/Ramachandran_Principle_Quiz|quiz in English]] | ||
| + | *** [[Dihedral/Ramachandran_Principle_Quiz (Spanish)|quiz in Spanish]] | ||
* [http://clfs690.alivetek.org/CLFS690/amino/animballjmol.htm Another animation] of phi and psi angles connected to a Ramachandran plot (by David Jollie) | * [http://clfs690.alivetek.org/CLFS690/amino/animballjmol.htm Another animation] of phi and psi angles connected to a Ramachandran plot (by David Jollie) | ||
* [[Ramachandran outlier]] showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot. | * [[Ramachandran outlier]] showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot. | ||
Revision as of 14:42, 27 June 2018
Dihedral angles in proteins and the Ramachandran plot
This in an index page pointing to several resources on these topics.
- Definition of phi and psi, in English and Spanish. A very simple display, illustrated with simplified 3D models.
- Dihedral angles in proteins: an interactive display of phi and psi dihedral angles using a model of a tripeptide.
- A regular page in Proteopedia.
- Simple presentation, featuring a 3D model with planes, clashes and animations.
- Phi and Psi Angles: a more detailed, guided explanation of determination and display of angles in the 3D model.
- A regular page in Proteopedia.
- The Ramachandran Plot
- A regular page in Proteopedia. Featured in an article in Biochemistry and Molecular Biology Education, 2010.
- Extensive description.
- Ramachandran Plot Inspection
- A special "Tutorial" page in Proteopedia (by Angel Herráez)
- Interactive Ramachandran plot with many controls and details, connecting the Ramachandran plot with the display on the 3D model. Includes planes, clashes and animations.
- The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins
- A special "Tutorial" page in Proteopedia (by Eric Martz)
- That tutorial repurposed as a slideshow with animated images (a Google Docs presentation):
- A quiz to self-assess understanding of the tutorial or the slideshow:
- Another animation of phi and psi angles connected to a Ramachandran plot (by David Jollie)
- Ramachandran outlier showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot.
