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5oc0

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Current revision (09:39, 6 December 2023) (edit) (undo)
 
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==Structure of E. coli superoxide oxidase==
==Structure of E. coli superoxide oxidase==
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<StructureSection load='5oc0' size='340' side='right' caption='[[5oc0]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
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<StructureSection load='5oc0' size='340' side='right'caption='[[5oc0]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5oc0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OC0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OC0 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5oc0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OC0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OC0 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=37X:OCTYL+GLUCOSE+NEOPENTYL+GLYCOL'>37X</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=37X:OCTYL+GLUCOSE+NEOPENTYL+GLYCOL'>37X</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cybB, b1418, JW5224 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5oc0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oc0 OCA], [https://pdbe.org/5oc0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5oc0 RCSB], [https://www.ebi.ac.uk/pdbsum/5oc0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5oc0 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oc0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oc0 OCA], [http://pdbe.org/5oc0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oc0 RCSB], [http://www.ebi.ac.uk/pdbsum/5oc0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oc0 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/C561_ECOLI C561_ECOLI]] B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm.
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[https://www.uniprot.org/uniprot/C561_ECOLI C561_ECOLI] B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ecoli]]
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[[Category: Escherichia coli K-12]]
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[[Category: Ballmoos, C von]]
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[[Category: Large Structures]]
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[[Category: Bennett, M]]
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[[Category: Bennett M]]
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[[Category: Biner, O]]
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[[Category: Biner O]]
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[[Category: Hogbom, M]]
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[[Category: Hogbom M]]
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[[Category: Lundgren, C A.K]]
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[[Category: Lundgren CAK]]
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[[Category: Sjostrand, D]]
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[[Category: Sjostrand D]]
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[[Category: Electron transport]]
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[[Category: Von Ballmoos C]]
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[[Category: Heme]]
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[[Category: Membrane protein]]
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[[Category: Oxidoreductase]]
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[[Category: Quinone]]
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[[Category: Respiratory chain]]
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[[Category: Ro]]
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[[Category: Superoxide]]
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[[Category: Ubiquinone]]
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Current revision

Structure of E. coli superoxide oxidase

PDB ID 5oc0

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